Evidence map›Paper›PMID 40622159›Full record

ArticlemSystems2025

Microbiome and metabolome association network analysis identifies

Jordan B Hernandez, Shivdeep S Hayer, Sophie Alvarez, Anne Fischer, Haley R Hassenstab, Katherine Cooper, Zahraa W Alsafwani, Andrew K Benson, Mallory J Suhr Van Haute, Jacques Izard and 2 more

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in mSystems, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Jordan B HernandezDepartment of Biology, University of Nebraska Omaha, Omaha, Nebraska, USA.ORCID 0009-0000-9824-959X
Shivdeep S HayerDepartment of Biology, University of Nebraska Omaha, Omaha, Nebraska, USA.
Sophie AlvarezProteomics and Metabolomics Facility, Nebraska Center for Biotechnology, University of Nebraska-Lincoln, Lincoln, Nebraska, USA.
Anne FischerProteomics and Metabolomics Facility, Nebraska Center for Biotechnology, University of Nebraska-Lincoln, Lincoln, Nebraska, USA.
Haley R HassenstabDepartment of Biology, University of Nebraska Omaha, Omaha, Nebraska, USA.
Katherine CooperSchool of Interdisciplinary Informatics, College of Information Science and Technology, University of Nebraska Omaha, Omaha, Nebraska, USA.
Zahraa W AlsafwaniSchool of Interdisciplinary Informatics, College of Information Science and Technology, University of Nebraska Omaha, Omaha, Nebraska, USA.
Andrew K BensonNebraska Food for Health Center, University of Nebraska-Lincoln, Lincoln, Nebraska, USA.
Mallory J Suhr Van HauteNebraska Food for Health Center, University of Nebraska-Lincoln, Lincoln, Nebraska, USA.
Jacques IzardNebraska Food for Health Center, University of Nebraska-Lincoln, Lincoln, Nebraska, USA.
Hyun-Seob SongNebraska Food for Health Center, University of Nebraska-Lincoln, Lincoln, Nebraska, USA.ORCID 0000-0002-2154-6358
Jonathan B ClaytonDepartment of Biology, University of Nebraska Omaha, Omaha, Nebraska, USA.ORCID 0000-0003-3709-3362

Funding

A Model of Antibiotic-induced Gut Dysbiosis and Depressive SymptomatologyK01OD030514 · OD · UNIVERSITY OF NEBRASKA OMAHA · PI Jonathan Brent Clayton · 2022 to 2026
$634k
E-PACERR: ENHANCING PROFESSIONALISM, ADVOCACY, AND CAPACITY FOR EXCELLENCE IN RESPONSIBLE BIOINFORMATICS RESEARCHR25GM141506 · NIGMS · UNIVERSITY OF NEBRASKA OMAHA · PI COOPER, KATHRYN M · 2021 to 2023
$262k
NIGMS NIH HHS R25 GM141506NIH HHS K01 OD030514
6 · The paper itself

Abstract

The common marmoset (

Indexed as

BifidobacteriumCallithrixClostridiumGastrointestinal MicrobiomeMetabolomeAnimalsFemaleMaleMetabolomicsRNA, Ribosomal, 16SRNA, Ribosomal, 16Samplicon sequencingbioinformaticsgut metabolomegut microbiomemarmosetmicrobial ecologymulti-omicsnetwork analysisnon-human primate

Identifiers

PMID40622159
PMCPMC12363189

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.