Evidence map›Paper›PMID 40622149›Full record

ArticlemBio2025

Overlooked role of heterotrophic prokaryotes in sulfur oxidation makes the sediment of the Bohai Sea a sufficient sink of hydrogen sulfide.

Zhiyi Chen, Luying Xun, Yongzhen Xia, Xianzhe Gong

Abstract read
In one paragraph

Article in mBio, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Zhiyi ChenState Key Laboratory of Microbial Technology, Shandong University, Qingdao, Shandong, China.ORCID 0009-0009-9569-7560
Luying XunState Key Laboratory of Microbial Technology, Shandong University, Qingdao, Shandong, China.ORCID 0000-0002-5770-9016
Yongzhen XiaState Key Laboratory of Microbial Technology, Shandong University, Qingdao, Shandong, China.ORCID 0000-0001-9950-1910
Xianzhe GongInstitute of Marine Science and Technology, Shandong University, Qingdao, Shandong, China.ORCID 0000-0001-8026-3123

Funding

National Natural Science Foundation of China 92351302Shandong University Foundation for Future Scholar Plan
6 · The paper itself

Abstract

Marine sediments are the active sites for the biogeochemical cycling of sulfur. Sulfate is used as a major terminal electron acceptor for the anaerobic oxidation of organic compounds in deep sediments, and the produced sulfide is normally oxidized back to sulfate in upper sediments. However, it is unclear which microorganisms, metabolic pathways, and enzymes are mainly involved in oxidation. Here, we used metagenomics, metatranscriptomics, and the testing of sulfide, thiosulfate, and sulfite oxidation in sediment samples to figure out how sulfide is oxidized in the Bohai Sea sediments. Surprisingly, sulfur oxidation is widespread in the microbial community (>67.1%) of mostly heterotrophic prokaryotes across 44 phyla, dominated by Proteobacteria. Known chemolithotrophic sulfur oxidizers were absent. The prevalent sulfur-oxidizing pathway was sulfide to zerovalent sulfur, sulfite, and then sulfate. Thiosulfate is not a major metabolic intermediate. Genes encoding sulfide oxidation (

Indexed as

BacteriaGeologic SedimentsHeterotrophic ProcessesHydrogen SulfideSulfurMetabolic Networks and PathwaysMetagenomicsOxidation-ReductionSeawaterSulfatesSulfidesThiosulfatesHydrogen SulfideSulfatesSulfidesSulfurThiosulfatesmarine sedimentmetagenomicsmetatranscriptomicsmicrobial diversitysulfur oxidation

Identifiers

PMID40622149
PMCPMC12345210

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.