Evidence map›Paper›PMID 40621900›Full record

ArticlemBio2025

Identification of polyphosphate-binding proteins in

Kanchi Baijal, Brianna Kore, Iryna Abramchuk, Alix Denoncourt, Shauna Han, Abby Simms, Amy Dagenais, Abagail R Long, Adam D Rudner, Mathieu Lavallée-Adam and 2 more

Abstract read
In one paragraph

Article in mBio, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Review
  3. The roles and synthesis of inorganic polyphosphate inbioRxiv : the preprint server for biology · 2026
    Article
  4. Article
  5. Inorganic Polyphosphate and Human Diseases.Progress in molecular and subcellular biology · 2026
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Kanchi BaijalDepartment of Cellular and Molecular Medicine, University of Ottawa, Ottawa, Ontario, Canada.ORCID 0009-0002-2235-5243
Brianna Kore *Department of Cellular and Molecular Medicine, University of Ottawa, Ottawa, Ontario, Canada.
Iryna Abramchuk *University of Ottawa, Ottawa Institute of Systems Biology, Ottawa, Ontario, Canada.
Alix DenoncourtDepartment of Cellular and Molecular Medicine, University of Ottawa, Ottawa, Ontario, Canada.
Shauna HanDepartment of Cellular and Molecular Medicine, University of Ottawa, Ottawa, Ontario, Canada.
Abby SimmsDepartment of Cellular and Molecular Medicine, University of Ottawa, Ottawa, Ontario, Canada.
Amy DagenaisDepartment of Cellular and Molecular Medicine, University of Ottawa, Ottawa, Ontario, Canada.
Abagail R LongDepartment of Microbiology, University of Alabama at Birmingham, Birmingham, Alabama, USA.
Adam D RudnerUniversity of Ottawa, Ottawa Institute of Systems Biology, Ottawa, Ontario, Canada.
Mathieu Lavallée-AdamUniversity of Ottawa, Ottawa Institute of Systems Biology, Ottawa, Ontario, Canada.
Michael J GrayDepartment of Microbiology, University of Alabama at Birmingham, Birmingham, Alabama, USA.ORCID 0000-0002-7112-4188
Michael DowneyDepartment of Cellular and Molecular Medicine, University of Ottawa, Ottawa, Ontario, Canada.ORCID 0000-0002-5234-6666

Funding

CIHR PJT-174987Natural Sciences and Engineering Research Council of Canada Discovery Grant
6 · The paper itself

Abstract

In many bacteria, polyphosphate kinase (PPK) enzymes use ATP to synthesize polyphosphate (polyP) in response to cellular stress. These chains of inorganic phosphates are joined by high-energy bonds and can reach hundreds of residues in length. PolyP plays diverse functions in helping bacteria adjust to changing environmental conditions. However, the molecular mechanisms underlying these functions are poorly understood. In eukaryotic cells, polyacidic serine- and lysine-rich (PASK) motifs of proteins can mediate binding to polyP chains. Whereas PASK motifs are relatively common in yeast and human cells, we report that these sequences are rare in bacteria commonly used for polyP research. Thus, to identify novel polyP-binding proteins in IMPORTANCE: In bacteria, polyphosphate (polyP) molecules are important regulators of cellular stress responses. Accordingly, cells that cannot make polyP display defects in processes that are important for bacterial survival, infection, and antibiotic resistance. The molecular mechanisms by which polyP exerts its functions are poorly understood. In eukaryotic cells, there has been much interest in the identification and characterization of polyP-binding proteins that act as effectors of polyP

Indexed as

Escherichia coliEscherichia coli ProteinsPolyphosphatesProtein BiosynthesisRibosomesGene Expression Regulation, BacterialPhosphotransferases (Phosphate Group Acceptor)Protein BindingEscherichia coli ProteinsPhosphotransferases (Phosphate Group Acceptor)polyphosphate kinasePolyphosphatesE. coliInfBpolyP-binding proteinspolyphosphatePPKribosomeRneRnr (VacB)SmpBSrmBstress responseYihIYjeQ (RsgA)

Identifiers

PMID40621900
PMCPMC12345225

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.