Evidence map›Paper›PMID 40619538›Full record

ArticleScientific reports2025

Reidentification of hybridization events with transcriptomic data and phylogenomic study in Seabuckthorn.

Hui Zhang, Zhiqi Wang, Xue Su, Dong Han, Lujie Yang, Ying Zhang, Jing Fang, Jingyuan Wang, Kun Sun

Abstract read
In one paragraph

Article in Scientific reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Hui Zhang *College of Life Sciences, Northwest Normal University, Lanzhou, China.
Zhiqi Wang *College of Life Sciences, Northwest Normal University, Lanzhou, China.
Xue SuCollege of Life Sciences, Northwest Normal University, Lanzhou, China.
Dong HanCollege of Life Sciences, Northwest Normal University, Lanzhou, China.
Lujie YangCollege of Life Sciences, Northwest Normal University, Lanzhou, China.
Ying ZhangCollege of Life Sciences, Northwest Normal University, Lanzhou, China.
Jing FangCollege of Life Sciences, Northwest Normal University, Lanzhou, China.
Jingyuan WangCollege of Life Sciences, Northwest Normal University, Lanzhou, China.
Kun SunCollege of Life Sciences, Northwest Normal University, Lanzhou, China. kunsun@nwnu.edu.cn.

Funding

National Natural Science Foundation of China 31060033National Natural Science Foundation of China 31660060the Industry Support Plan for Higher Education in Gansu Province 2022CYZC-14the Science and Technology Talents Innovation and Entrepreneurship Project of Lanzhou City 2023-RC-37
6 · The paper itself

Abstract

Natural hybridization in sea buckthorn (Hippophae spp.) is well documented. While the parental species involved in these events have been identified, distinctions between F1 hybrids and later-generation (Fn) hybrids remain insufficiently explored, and their genetic compositions are not yet fully understood. In this study, we employed transcriptomic data and reference genomes to identify Fn hybrids in two natural hybrid populations, confirming eight individuals-including H. goniocarpa Lian. X. L. Chen et K. Sun and four members of a hybrid swarm from Qinghai, China-as F1 hybrids. These findings support the hypothesis that H. goniocarpa is not a distinct species, but rather an F1 hybrid within the genus. Additionally, we discuss limitations specific to SNP calling from transcriptomic data-such as allele-specific expression and low transcript abundance-which may lead to the misclassification of heterozygous sites as homozygous. Finally, we constructed the first phylogenomic tree of the Hippophae genus using transcriptomic data and performed a comparative analysis of interspecific relationships based on SNP and indel markers derived from the same dataset.

Indexed as

HippophaeHybridization, GeneticPhylogenyTranscriptomeAnimalsGene Expression ProfilingINDEL MutationPolymorphism, Single NucleotideF1 hybrid identificationPhylogenomicsSea BuckthornSNP callingTranscriptome

Identifiers

PMID40619538
PMCPMC12230173

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.