Evidence map›Paper›PMID 40618024›Full record

ArticleBMC microbiology2025

Soil humus-reducing bacteria in the Xisha islands, South China sea: unveiling diversity and predicting functions.

Xiao Deng, Saba Najeeb, Kun Liu, Huadong Tan, Yi Li, Chunyuan Wu, Yi Zhang

Abstract read
In one paragraph

Article in BMC microbiology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Xiao Deng *Environmental and Plant Protection Institute, Chinese Academy of Tropical Agricultural Sciences, Haikou, Hainan, 571101, China.
Saba Najeeb *Environmental and Plant Protection Institute, Chinese Academy of Tropical Agricultural Sciences, Haikou, Hainan, 571101, China.
Kun LiuSansha Municipal Bureau of Marine Development and Fisheries, Sansha, Hainan, 573199, China.
Huadong TanEnvironmental and Plant Protection Institute, Chinese Academy of Tropical Agricultural Sciences, Haikou, Hainan, 571101, China.
Yi LiEnvironmental and Plant Protection Institute, Chinese Academy of Tropical Agricultural Sciences, Haikou, Hainan, 571101, China.
Chunyuan WuEnvironmental and Plant Protection Institute, Chinese Academy of Tropical Agricultural Sciences, Haikou, Hainan, 571101, China. wuchunyuangz@126.com.
Yi ZhangEnvironmental and Plant Protection Institute, Chinese Academy of Tropical Agricultural Sciences, Haikou, Hainan, 571101, China.

Funding

the Hainan Provincial Postdoctoral Research Projects (2024), and the Special Programme of Nanfeng from the Ministry of Agriculture and Rural Affairs of China NFZX-2024
6 · The paper itself

Abstract

Humic-reducing bacteria (HRB) play crucial roles in various biogeochemical cycles, including carbon (C), nitrogen (N), and sulfur (S) cycles. Tropical reef islands, constituting unique ecosystems, possess distinct soil properties. This study represents the first comprehensive exploration of HRB communities in soil profiles on the Xisha Islands in the South China Sea. Our research aimed to understand their vertical distribution, diversity, and ecological functions. Soil samples collected from different layers (0-12 cm, 12-25 cm, 25-55 cm, and 55-80 cm) on Zhaoshu Island (ZSI), North Island (NI), and Middle Sandbar (MS) were analyzed using High-throughput sequencing and functional annotation of prokaryotic taxa (FAPROTAX). The results demonstrated that Firmicutes was the predominant phylum across all studied reef islands. HRB communities primarily comprised the Firmicutes (60.5-81.7%) and Proteobacteria (18.2-39.3%) phyla. Firmicutes exhibited higher abundance in tropical reef islands than in other habitats, whereas Proteobacteria were less so. The relative abundance of Firmicutes was lower in surface layers, whereas Proteobacteria showed an opposite pattern. Alpha diversity of HRB communities was significantly higher in 0-25 cm than in 25-80 cm depths. Beta diversity in HRB communities' beta diversity differed significantly between depths of 0-25 cm and 25-80 cm. Soil pH, organic matter, available phosphorus, and five other factors were significantly correlated with the HRB community structure. Further analysis using FAPROTAX corroborated that HRB communities on tropical reef islands primarily functioned in C, Mn, and S cycles, exhibiting significant differences between the 0-25 cm and 25-80 cm depths. These findings deepen our understanding of the relationship between HRB communities and soil environments, offering valuable insights into conserving the Xisha Islands' ecosystem.

Indexed as

BacteriaBiodiversitySoilSoil MicrobiologyCarbonChinaEcosystemHigh-Throughput Nucleotide SequencingIslandsMicrobiotaNitrogenPhylogenyRNA, Ribosomal, 16SCarbonNitrogenRNA, Ribosomal, 16SSoilCommunity compositionFunctional traitsHumic-reducing bacteriaSoil environmentTropical reef ecosystemVertical distribution

Identifiers

PMID40618024
PMCPMC12228194

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.