Evidence map›Paper›PMID 40615810›Full record

ArticleBMC plant biology2025

Comprehensive genome-wide analysis of bHLH family genes in Nymphaea colorata and molecular characterization of NcTT8.

Qi Liu, Yezi Zhao, Yun Wang, Qian Wei, Yan Zhang, Shujuan Li

Abstract read
In one paragraph

Article in BMC plant biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

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2citing papers in PubMed
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1 · What the graph read from it

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3 · Its place in the literature

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2 citing papers in PubMed.

  1. Article
  2. Characterization and evolution of theFrontiers in plant science · 2026
    Article
4 · The record

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5 · Who and what money

Authors and funding

6 authors.

Qi LiuXi'an Botanical Garden of Shaanxi Province, Institute of Botany of Shaanxi Province, Shaanxi Engineering Research Centre for Conservation and Utilization of Botanical Resources, Xi'an, China.
Yezi ZhaoBeijing Florascape Co., Ltd. Xi'an Branch Company, Xi'an, China.
Yun WangSchool of Agriculture and Bioengineering, Longdong University, Qingyang, China.
Qian WeiXi'an Botanical Garden of Shaanxi Province, Institute of Botany of Shaanxi Province, Shaanxi Engineering Research Centre for Conservation and Utilization of Botanical Resources, Xi'an, China.
Yan ZhangXi'an Botanical Garden of Shaanxi Province, Institute of Botany of Shaanxi Province, Shaanxi Engineering Research Centre for Conservation and Utilization of Botanical Resources, Xi'an, China.
Shujuan LiXi'an Botanical Garden of Shaanxi Province, Institute of Botany of Shaanxi Province, Shaanxi Engineering Research Centre for Conservation and Utilization of Botanical Resources, Xi'an, China. lishujuanxbg@163.com.

Funding

Key Cultivation Research Project of the Shaanxi Academy of Sciences 2022K-03Key Research and Development Program of the Shaanxi Provincial Science and Technology Department 2024NC-YBXM-070
6 · The paper itself

Abstract

backgroundWater lilies (Nymphaea spp.) are important aquatic ornamental plants with significant research value in horticulture, ecosystem studies, and evolutionary biology. The basic helix-loop-helix (bHLH) transcription factors, one of the largest transcription factor families in plants, play pivotal roles in regulating plant growth and development, secondary metabolism, and stress responses.

resultsA total of 76 bHLH genes, including 5 MYC genes, were identified in N. colorata. Among these, 18 genes underwent segmental duplication, while five genes experienced tandem duplication. Natural selection was identified as the primary driver of codon usage bias in NcbHLH genes. Promoter analysis revealed multiple cis-acting elements associated with hormone responses and abiotic stress responses. Functional annotation suggested that several NcbHLH transcription factors may be involved in floral organ development, stress responses, and the jasmonic acid (JA) signaling pathway. Notably, NcMYC3, a homolog of TT8, was localized to the nucleus and demonstrated transcriptional activation activity.

conclusionsThis study systematically elucidates the evolutionary characteristics and functional properties of the N. colorata bHLH gene family, providing a foundation for further exploration of the regulatory mechanisms of bHLH transcription factors and their roles in anthocyanin biosynthesis.

Indexed as

Basic Helix-Loop-Helix ProteinsGenome, PlantNymphaeaPlant ProteinsCyclopentanesEvolution, MolecularGene Expression Regulation, PlantGenes, PlantMultigene FamilyOxylipinsPhylogenyBasic Helix-Loop-Helix ProteinsCyclopentanesOxylipinsPlant ProteinsAdaptive evolutionBHLH transcription factorsGene expressionNymphaea colorataTT8

Identifiers

PMID40615810
PMCPMC12226895

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.