Evidence map›Paper›PMID 40615674›Full record

ArticleNature genetics2025

Cytidine diphosphate diacylglycerol synthase 2 is a synthetic lethal target in mesenchymal-like cancers.

Tim Arnoldus, Alex van Vliet, Onno B Bleijerveld, Adriaan F H de Groot, Qinglin Piao, Niek Blomberg, Désirée Schatton, Jing Dong, Susan E van Hal-van Veen, Rolf Harkes and 9 more

Abstract read
In one paragraph

Article in Nature genetics, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Tim ArnoldusDivision of Molecular Oncology and Immunology, Oncode Institute, Netherlands Cancer Institute, Amsterdam, The Netherlands.ORCID http://orcid.org/0009-0005-2104-4832
Alex van VlietDivision of Molecular Oncology and Immunology, Oncode Institute, Netherlands Cancer Institute, Amsterdam, The Netherlands.ORCID http://orcid.org/0000-0001-9399-2894
Onno B BleijerveldProteomics facility, Netherlands Cancer Institute, Amsterdam, The Netherlands.ORCID http://orcid.org/0000-0002-9395-2347
Adriaan F H de GrootDivision of Molecular Oncology and Immunology, Oncode Institute, Netherlands Cancer Institute, Amsterdam, The Netherlands.
Qinglin PiaoDivision of Molecular Oncology and Immunology, Oncode Institute, Netherlands Cancer Institute, Amsterdam, The Netherlands.
Niek BlombergCenter for Proteomics and Metabolomics, Leiden University Medical Center, Leiden, The Netherlands.
Désirée SchattonCluster of Excellence Cellular Stress Responses in Aging-associated Diseases, University of Cologne, Faculty of Medicine and University Hospital Cologne, Institute for Metabolomics in Ageing, Cologne, Germany.ORCID http://orcid.org/0009-0007-7554-8985
Jing DongDivision of Molecular Oncology and Immunology, Oncode Institute, Netherlands Cancer Institute, Amsterdam, The Netherlands.ORCID http://orcid.org/0009-0000-9121-9849
Susan E van Hal-van VeenDivision of Molecular Oncology and Immunology, Oncode Institute, Netherlands Cancer Institute, Amsterdam, The Netherlands.
Rolf HarkesBioImaging Facility, Netherlands Cancer Institute, Amsterdam, The Netherlands.
Anita E GrootemaatElectron Microscopy Centre Amsterdam, Amsterdam University Medical Center, Amsterdam, The Netherlands.
Natalie ProostMouse Clinic for Cancer and Aging Preclinical Intervention facility, Netherlands Cancer Institute, Amsterdam, The Netherlands.
Birol CabukustaDepartment of Cell and Chemical Biology, Oncode Institute, Leiden University Medical Center, Leiden, The Netherlands.
Christian FrezzaCluster of Excellence Cellular Stress Responses in Aging-associated Diseases, University of Cologne, Faculty of Medicine and University Hospital Cologne, Institute for Metabolomics in Ageing, Cologne, Germany.ORCID http://orcid.org/0000-0002-3293-7397
Marieke van de VenMouse Clinic for Cancer and Aging Preclinical Intervention facility, Netherlands Cancer Institute, Amsterdam, The Netherlands.
Nicole N van der WelElectron Microscopy Centre Amsterdam, Amsterdam University Medical Center, Amsterdam, The Netherlands.
Martin GieraCenter for Proteomics and Metabolomics, Leiden University Medical Center, Leiden, The Netherlands.ORCID http://orcid.org/0000-0003-1684-1894
Maarten AltelaarProteomics facility, Netherlands Cancer Institute, Amsterdam, The Netherlands.ORCID http://orcid.org/0000-0001-5093-5945
Daniel S PeeperDivision of Molecular Oncology and Immunology, Oncode Institute, Netherlands Cancer Institute, Amsterdam, The Netherlands. d.peeper@nki.nl.ORCID http://orcid.org/0000-0003-1293-3177

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Synthetic lethal interactions (SLIs) based on genomic alterations in cancer have been therapeutically explored. We investigated the SLI space as a function of differential RNA expression in cancer and normal tissue. Computational analyses of functional genomic and gene expression resources uncovered a cancer-specific SLI between the paralogs cytidine diphosphate diacylglycerol synthase 1 (CDS1) and CDS2. The essentiality of CDS2 for cell survival is observed for mesenchymal-like cancers, which have low or absent CDS1 expression and account for roughly half of all cancers. Mechanistically, the CDS1-2 SLI is accompanied by disruption of lipid homeostasis, including accumulation of cholesterol esters and triglycerides, and apoptosis. Genome-wide CRISPR-Cas9 knockout screens in CDS1-negative cancer cells identify no common escape mechanism of death caused by CDS2 ablation, indicating the robustness of the SLI. Synthetic lethality is driven by CDS2 dosage and depends on catalytic activity. Thus, CDS2 may serve as a pharmacologically tractable target in mesenchymal-like cancers.

Indexed as

NeoplasmsSynthetic Lethal MutationsApoptosisCell Line, TumorCRISPR-Cas SystemsGene Expression Regulation, NeoplasticHumans

Identifiers

PMID40615674
PMCPMC12283369

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.