Evidence map›Paper›PMID 40613378›Full record

ReviewFEBS letters2025

Mechanisms and kinetic assays of aminoacyl-tRNA synthetases.

Igor Zivkovic, Morana Dulic, Ita Gruic-Sovulj

Abstract readReview
In one paragraph

Review in FEBS letters, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Igor ZivkovicDepartment of Chemistry, Faculty of Science, University of Zagreb, Zagreb, Croatia.
Morana DulicDepartment of Chemistry, Faculty of Science, University of Zagreb, Zagreb, Croatia.ORCID https://orcid.org/0000-0003-2786-8996
Ita Gruic-SovuljDepartment of Chemistry, Faculty of Science, University of Zagreb, Zagreb, Croatia.ORCID https://orcid.org/0000-0002-3930-8323

Funding

European Regional Development Fund KK.01.1.1.02.0016Hrvatska Zaklada za Znanost IP 2022 10 1400
6 · The paper itself

Abstract

Accurate protein synthesis is crucial for life. The key players are aminoacyl-tRNA synthetases (AARSs), which read the genetic code by pairing cognate amino acids and tRNAs. AARSs establish high amino acid selectivity by employing physicochemical limits in molecular recognition. However, chemical and structural resemblance between some amino acids prevents their efficient discrimination by AARSs. In these cases, AARSs hydrolyze the formed non-cognate intermediates or aa-tRNAs to ensure selectivity, establishing complex reaction pathways within the synthetic and editing sites. Understanding AARS mechanisms is crucial for understanding their biology. Here, we review kinetic assays for exploring AARS mechanisms. For each assay, we state the most suitable substrates, product(s) recommended to follow, and, importantly, possible caveats that may lead to the kinetic artefact.

Indexed as

Amino Acyl-tRNA SynthetasesEnzyme AssaysAmino AcidsHumansKineticsProtein BiosynthesisRNA, TransferSubstrate SpecificityAmino AcidsAmino Acyl-tRNA SynthetasesRNA, TransferAARS editingAARS kinetic assaysamino acid activationaminoacyl transfer stepaminoacyl‐tRNA synthetase kinetic artefactsaminoacyl‐tRNA synthetasesATP‐PPi exchangedeacylation assaypost‐transfer editingpre‐transfer editing

Identifiers

PMID40613378
PMCPMC12683201

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.