Evidence map›Paper›PMID 40612591›Full record

ArticleFrontiers in plant science2025

Predictive prioritization of genes significantly associated with biotic and abiotic stresses in maize using machine learning algorithms.

Anjan Kumar Pradhan, Prasad Gandham, Kanniah Rajasekaran, Niranjan Baisakh

Abstract read
In one paragraph

Article in Frontiers in plant science, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Anjan Kumar PradhanSchool of Plant, Environmental and Soil Sciences, Louisiana State University Agricultural Center, Baton Rouge, LA, United States.
Prasad GandhamSchool of Plant, Environmental and Soil Sciences, Louisiana State University Agricultural Center, Baton Rouge, LA, United States.
Kanniah RajasekaranSouthern Regional Research Center, USDA-ARS, New Orleans, LA, United States.
Niranjan BaisakhSchool of Plant, Environmental and Soil Sciences, Louisiana State University Agricultural Center, Baton Rouge, LA, United States.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Both biotic and abiotic stresses pose serious threats to the growth and productivity of crop plants, including maize worldwide. Identifying genes and associated networks underlying stress resistance responses in maize is paramount. A meta-transcriptome approach was undertaken to interrogate 39,756 genes differentially expressed in response to biotic and abiotic stresses in maize were interrogated for prioritization through seven machine learning (ML) models, such as support vector machine (SVM), partial least squares discriminant analysis (PLSDA), k-nearest neighbors (KNN), gradient boosting machine (GBM), random forest (RF), naïve bayes (NB), and decision tree (DT) to predict top-most significant genes for stress conditions. Improved performances of the algorithms via feature selection from the raw gene features identified 235 unique genes as top candidate genes across all models for all stresses. Three genes such as

Indexed as

a(biotic) stressartificial intelligencegene expressionmaizeRNA-Seq

Identifiers

PMID40612591
PMCPMC12222081

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.