Evidence map›Paper›PMID 40612501›Full record

ArticleiScience2025

Genetic signatures in the highly virulent subtype B human immunodeficiency virus-1 conferring resistance to broadly neutralizing antibodies.

Manukumar Honnayakanahalli Marichannegowda, Georgina Agyekum, Cinthya Zelaya Aparicio, Alonso Heredia, Yin Wang, Hongshuo Song

Abstract read
In one paragraph

Article in iScience, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors.

Manukumar Honnayakanahalli MarichannegowdaInstitute of Human Virology, University of Maryland School of Medicine, Baltimore, MD, USA.
Georgina AgyekumMorsani College of Medicine, University of South Florida, Tampa, FL, USA.
Cinthya Zelaya AparicioMorsani College of Medicine, University of South Florida, Tampa, FL, USA.
Alonso HerediaInstitute of Human Virology, University of Maryland School of Medicine, Baltimore, MD, USA.
Yin WangInstitute of Human Virology, University of Maryland School of Medicine, Baltimore, MD, USA.
Hongshuo SongInstitute of Human Virology, University of Maryland School of Medicine, Baltimore, MD, USA.

Funding

Quantification of the HIV-1 Reservoir by Immuno-PCRR01AI120008 · NIAID · UNIVERSITY OF MARYLAND BALTIMORE · PI HEREDIA, ALONSO, LICHTERFELD, MATHIAS · 2015 to 2019
$1.9M
Escape by Shifting: Viral Entry Tropism Shift as an Evolutionary Mechanism of Immune EvasionR01AI181601 · NIAID · UNIVERSITY OF SOUTH FLORIDA · PI Hongshuo Song · 2024 to 2026
$1.2M
Genetic imprints of therapeutic Ad26/MVA mosaic vaccine in rebound HIV-1 genome from acutely treated individualsR21AI147893 · NIAID · UNIVERSITY OF MARYLAND BALTIMORE · PI SONG, HONGSHUO · 2019 to 2020
$441k
NIAID NIH HHS R01 AI120008NIAID NIH HHS R01 AI181601NIAID NIH HHS R21 AI147893
6 · The paper itself

Abstract

HIV-1 is considered to become less sensitive to existing neutralizing antibodies over time. Our study on virulent B (VB) HIV-1 identified genetic signatures responsible for immune escape from broadly neutralizing antibodies (bNAbs) targeting V1/V2 and V3 epitopes. We found that the absence of the N295 and N332 glycans in the high mannose patch, which are crucial for neutralization by V3 glycan bNAbs and are typically conserved in subtype B HIV-1, is a notable feature in more than half of the VB variants. Neutralization assays confirmed that the loss of these two glycans in VB HIV-1 leads to escape from V3 glycan bNAbs. Additionally, all VB variants have an insertion in V2, contributing to escape from V1/V2 bNAbs PG9 and PG16. These findings demonstrate that the VB strains have unique genetic and neutralization characteristics compared to other subtype B strains. The evolutionary origin of these distinctive features remains to be determined.

Indexed as

Evolutionary mechanismsGeneticsGlycobiologyVirology

Identifiers

PMID40612501
PMCPMC12221649

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.