Evidence map›Paper›PMID 40611905›Full record

ArticlebioRxiv : the preprint server for biology2025

Differential DNA methylation in blood in nuclear genes that encode mitochondrial proteins in mild cognitive impairment and Alzheimer's disease.

Alexander E Boruch, Andy Madrid, Ligia A Papale, Phillip E Bergmann, Isabelle Renteria, Samuel Faasen, Dane B Cook, Reid S Alisch, Kirk J Hogan

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Alexander E BoruchWilliam S. Middleton Memorial Veterans Hospital, Madison, WI, USA.ORCID 0000-0001-8825-3763
Andy MadridDepartment of Neurological Surgery, University of Wisconsin School of Medicine and Public Health, Madison, WI, USA.ORCID 0000-0001-8612-5995
Ligia A PapaleDepartment of Neurological Surgery, University of Wisconsin School of Medicine and Public Health, Madison, WI, USA.ORCID 0000-0002-6457-0358
Phillip E BergmannDepartment of Neurological Surgery, University of Wisconsin School of Medicine and Public Health, Madison, WI, USA.ORCID 0000-0002-1049-8661
Isabelle RenteriaDepartment of Neurology, Washington University School of Medicine, St. Louis, MO, USA.ORCID 0000-0003-3353-3287
Samuel FaasenDepartment of Neurological Surgery, University of Wisconsin School of Medicine and Public Health, Madison, WI, USA.ORCID 0009-0002-0265-9258
Dane B CookWilliam S. Middleton Memorial Veterans Hospital, Madison, WI, USA.ORCID 0000-0002-3992-4820
Reid S AlischDepartment of Neurological Surgery, University of Wisconsin School of Medicine and Public Health, Madison, WI, USA.ORCID 0000-0003-0637-4137
Kirk J HoganWisconsin Alzheimer's Institute, University of Wisconsin School of Medicine and Public Health, Madison, WI, USA.ORCID 0000-0001-6329-2651

Funding

Wisconsin Registry for Alzheimer's Prevention: Sex Differences in DNA MethylationR01AG027161 · NIA · UNIVERSITY OF WISCONSIN-MADISON · PI Nathaniel Ark Chin, Sterling C Johnson · 2007 to 2026
$35.6M
Wisconsin Alzheimer's Disease Research CenterP30AG062715 · NIA · UNIVERSITY OF WISCONSIN-MADISON · PI Sanjay Asthana · 2019 to 2026
$34.5M
The Longitudinal Course of Neural Function and Amyloid in People At Risk for ADR01AG021155 · NIA · UNIVERSITY OF WISCONSIN-MADISON · PI Sterling C Johnson · 2004 to 2026
$27.0M
Research Training for Computation and Informatics in Biology and MedicineT15LM007359 · NLM · UNIVERSITY OF WISCONSIN-MADISON · PI Mark W. Craven, Colin Noel Dewey · 2002 to 2026
$22.6M
Statistical Methods for the Analysis of ChlP-chip DataR01HG003747 · NHGRI · UNIVERSITY OF WISCONSIN-MADISON · PI KELES, SUNDUZ · 2007 to 2024
$4.8M
Blood DNA Methylation Biomarkers of Alzheimer's DiseaseR01AG066179 · NIA · UNIVERSITY OF WISCONSIN-MADISON · PI ALISCH, REID SPENCER, HOGAN, KIRK J · 2020 to 2024
$3.0M
Biograph Horizon PET/CTS10OD025245 · OD · UNIVERSITY OF WISCONSIN-MADISON · PI CHRISTIAN, BRADLEY T · 2018 to 2018
$1.3M
CSRD VA I01 CX001329CSRD VA IK6 CX002369NHGRI NIH HHS R01 HG003747NIA NIH HHS P30 AG062715NIA NIH HHS R01 AG021155NIA NIH HHS R01 AG027161NIA NIH HHS R01 AG066179NIH HHS S10 OD025245NLM NIH HHS T15 LM007359
6 · The paper itself

Abstract

Background: Altered mitochondrial function contributes to the pathogenesis of mild cognitive impairment (MCI) and late-onset dementia due to Alzheimer's disease (AD). Objective: To test for differential methylation in nuclear genes that encode proteins that participate in mitochondrial function between cognitively unimpaired participants (CU) and those with MCI and AD. Methods: Recently published whole genome methylation sequencing (WGMS) in blood from CU participants ( Results: Seventy-four nuclear genes that encode proteins that participate in mitochondrial function were differentially methylated between persons with MCI and CU. Seventy-one genes were differentially methylated between persons with AD and CU, and 132 genes were differentially methylated between persons with MCI and AD. Thirteen differentially methylated genes shared between the 3 comparisons support contributions from disrupted metabolism and oxidative stress pathways in AD pathogenesis. Conclusions: Nuclear genes that encode proteins that participate in mitochondrial glucose metabolism, fatty acid metabolism and oxidative stress pathways are differentially methylated between persons who are CU and those with MCI and AD.

Indexed as

Alzheimer’s diseaseDNA methylationfatty acid metabolismglucose metabolismmild cognitive impairmentoxidative damagewhole genome methylation sequencing

Identifiers

PMID40611905
PMCPMC12224535

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.