Evidence map›Paper›PMID 40611327›Full record

ArticleCritical care (London, England)2025

Longitudinal analysis of lung microbiome, immune response, and metabolism in ventilator-associated pneumonia: a cohort study.

Ingrid G Bustos, Cristian C Serrano-Mayorga, José L Guerrero, Jennifer M Baker, Christopher Brown, Nicole Falkowski, Piyush Ranjan, Alejandro Acosta-Gonzalez, Lina M Mendez, Acenet Garcia-Cordoba and 12 more

Abstract read
In one paragraph

Article in Critical care (London, England), 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Review
  2. Article
  3. Palmitoleic acid loss links pulmonary dysbiosis to lung injury after single-lung ventilation.American journal of respiratory cell and molecular biology · 2026
    Article
  4. Article
  5. Review
  6. Review
  7. Review
  8. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors.

Ingrid G BustosUnisabana Center for Translational Science, School of Medicine, Universidad de La Sabana, Chia, Colombia.
Cristian C Serrano-MayorgaUnisabana Center for Translational Science, School of Medicine, Universidad de La Sabana, Chia, Colombia.
José L GuerreroMet Core-Metabolomics Core Facility. Vice-Presidency of Research and Knowledge Creation, Universidad de Los Andes, Bogota, Colombia.
Jennifer M BakerDivision of Pulmonary and Critical Care Medicine, Department of Internal Medicine, University of Michigan Health System, Ann Arbor, MI, 48109, USA.
Christopher BrownAdvanced Research Computing (ARC)Information and Technology Services (ITS), University of Michigan, Ann Arbor, MI, USA.
Nicole FalkowskiDivision of Pulmonary and Critical Care Medicine, Department of Internal Medicine, University of Michigan Health System, Ann Arbor, MI, 48109, USA.
Piyush RanjanDivision of Pulmonary and Critical Care Medicine, Department of Internal Medicine, University of Michigan Health System, Ann Arbor, MI, 48109, USA.
Alejandro Acosta-GonzalezUnisabana Center for Translational Science, School of Medicine, Universidad de La Sabana, Chia, Colombia.
Lina M MendezClinica Universidad de La Sabana, Chia, Colombia.
Acenet Garcia-CordobaClinica Universidad de La Sabana, Chia, Colombia.
Adriana Echeverry-GutierrezClinica Universidad de La Sabana, Chia, Colombia.
Denis A BojacaClinica Universidad de La Sabana, Chia, Colombia.
Marcela Chisica-MahechaClinica Universidad de La Sabana, Chia, Colombia.
Nicol Guarin-TequiaClinica Universidad de La Sabana, Chia, Colombia.
Liliana Romero-RomeroClinica Universidad de La Sabana, Chia, Colombia.
Norberto Gonzalez-JuarbeDepartment of Cell Biology and Molecular Genetics, University of Maryland, College park, MD, USA.
Alejandro RodriguezCritical Care DepartmentURV/IISPV/CIBERES, Hospital Universitario Joan XXIII, Tarragona, Spain.
Mónica P CalaMet Core-Metabolomics Core Facility. Vice-Presidency of Research and Knowledge Creation, Universidad de Los Andes, Bogota, Colombia.
Ignacio Martin-LoechesMultidisciplinary Intensive Care Research Organization (MICRO), St James Hospital, Dublin, Dublin, Ireland.
Sanjay H ChotirmallLee Kong Chian School of Medicine, Nanyang Technological University, Singapore, Singapore.
Robert P DicksonDivision of Pulmonary and Critical Care Medicine, Department of Internal Medicine, University of Michigan Health System, Ann Arbor, MI, 48109, USA.
Luis F ReyesUnisabana Center for Translational Science, School of Medicine, Universidad de La Sabana, Chia, Colombia. luis.reyes5@unisabana.edu.co.

Funding

Midcareer Investigator Award in Patient-Oriented Research in the Microbiome and Lung DiseaseK24HL159247 · NHLBI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Robert Pickett Dickson · 2022 to 2026
$625k
NHLBI NIH HHS K24 HL159247Universidad de La Sabana , Colombia MED-260-2019
6 · The paper itself

Abstract

rationaleVentilator-associated pneumonia (VAP) is a common complication in patients under invasive mechanical ventilation (IMV), yet its underlying mechanisms remain poorly understood. This study investigated the lung microbiome, inflammatory response, and metabolism in patients undergoing IMV to identify factors that may predispose them to developing VAP.

objectivesTo investigate how changes in lung microbiome composition, inflammatory response, and metabolic profiles may predispose patients undergoing IMV to develop VAP.

methodsPatients requiring IMV for at least 48 h due to non-infectious respiratory failure were enrolled. Bronchoalveolar lavage (BAL) samples were collected at baseline, upon VAP diagnosis, or after 72 h for non-VAP cases. DNA sequencing, cytokine quantification, and metabolomic analyses were performed.

resultsOf the 80 patients, 41 (51%) developed VAP. No significant differences in alpha or beta diversity of the lung microbiome were observed between groups. However, both groups showed changes in microbiome composition over time, suggesting an impact of IMV. Tumour necrosis factor-alpha (TNF-α) lung levels were significantly higher in VAP patients, while lung interleukin-1 beta (IL-1β) increased in all patients. Metabolomic analysis revealed shifts in pentose phosphate and citric acid cycle pathways, indicating a transition to anaerobic metabolism in the lungs of VAP patients.

conclusionsMechanical ventilation was associated with temporal changes in lung microbiome composition independent of VAP development. VAP cases exhibited higher TNF-α levels and metabolic profiles indicative of anaerobic adaptation, while IL-1β elevations were primarily linked to mechanical ventilation rather than infection.

Indexed as

LungMicrobiotaPneumonia, Ventilator-AssociatedAgedBronchoalveolar Lavage FluidCohort StudiesCytokinesFemaleHumansLongitudinal StudiesMaleMiddle AgedRespiration, ArtificialCytokinesHost microbial interactionMetabolomicsMicrobiotaVentilator-Associated pneumonia (VAP)

Identifiers

PMID40611327
PMCPMC12231915

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.