Evidence map›Paper›PMID 40610675›Full record

ArticleCommunications biology2025

Cancer cell type-specific derepression of transposable elements by inhibition of chromatin modifier enzymes.

Divyesh Patel, Ville Tiusanen, Konsta Karttunen, Päivi Pihlajamaa, Biswajyoti Sahu

Abstract read
In one paragraph

Article in Communications biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Divyesh PatelApplied Tumor Genomics Program, Faculty of Medicine, University of Helsinki, Helsinki, Finland.ORCID http://orcid.org/0000-0003-4005-8429
Ville TiusanenApplied Tumor Genomics Program, Faculty of Medicine, University of Helsinki, Helsinki, Finland.ORCID http://orcid.org/0009-0002-9681-9696
Konsta KarttunenApplied Tumor Genomics Program, Faculty of Medicine, University of Helsinki, Helsinki, Finland.ORCID http://orcid.org/0000-0003-3511-7156
Päivi PihlajamaaApplied Tumor Genomics Program, Faculty of Medicine, University of Helsinki, Helsinki, Finland.ORCID http://orcid.org/0000-0001-9725-6907
Biswajyoti SahuApplied Tumor Genomics Program, Faculty of Medicine, University of Helsinki, Helsinki, Finland. biswajyoti.sahu@ncmbm.uio.no.ORCID http://orcid.org/0000-0001-6576-5440

Funding

Academy of Finland (Suomen Akatemia) 317807, 320114, 346065Academy of Finland (Suomen Akatemia) 356021Kreftforeningen (Norwegian Cancer Society) 274630
6 · The paper itself

Abstract

Derepression of transposable elements (TE) by epigenetic therapy leads to the activation of immune response in cancer cells. However, the molecular mechanism of TE regulation by distinct chromatin modifier enzymes (CME) in context of p53 is still elusive. Here, we used FDA-approved epigenetic drugs to systematically inhibit distinct CMEs in p53 wild-type and p53-mutant colorectal, esophageal, and prostate cancer cells. We show that distinct TE subfamilies are derepressed by inhibition of different CMEs in cell type-specific manner. Co-inhibition of DNMT and HDAC (DNMTi-HDACi) had the most consistent effect across cancer types. Loss of p53 results in stronger TE activation and TE-chimeric transcript expression and this effect is largely mediated by the non-genomic actions of p53. Robust immune response elicited by DNMTi-HDACi is due to induced inverted repeat Alu expression concomitant with reduced ADAR1-mediated Alu RNA editing. Collectively, our systematic analyses provide insights for rational use of epigenetic therapies in distinct cancers.

Indexed as

ChromatinDNA Transposable ElementsHistone Deacetylase InhibitorsNeoplasmsCell Line, TumorEpigenesis, GeneticGene Expression Regulation, NeoplasticHumansTumor Suppressor Protein p53ChromatinDNA Transposable ElementsHistone Deacetylase InhibitorsTumor Suppressor Protein p53

Identifiers

PMID40610675
PMCPMC12229592

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.