Evidence map›Paper›PMID 40610501›Full record

ArticleScientific data2025

High-quality chromosome-level genome of three Meretrix species using Nanopore and Hi-C technologies.

Che-Chun Chen, Te-Hua Hsu, Hsin-Yun Lu, Sen-Lin Tang, Ying-Ning Ho

Abstract read
In one paragraph

Article in Scientific data, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Che-Chun ChenBiodiversity Research Center, Academia Sinica, Taipei, Taiwan.
Te-Hua HsuDepartment of Aquaculture, National Taiwan Ocean University, Keelung, Taiwan.
Hsin-Yun LuInstitute of Marine Biology, National Taiwan Ocean University, Keelung, Taiwan.
Sen-Lin TangBiodiversity Research Center, Academia Sinica, Taipei, Taiwan.ORCID 0000-0002-5852-972X
Ying-Ning HoTaiwan Oceans Genome Center, National Taiwan Ocean University, Keelung, Taiwan. ynho@mail.ntou.edu.tw.ORCID 0000-0003-0943-1416

Funding

Ministry of Science and Technology, Taiwan (Ministry of Science and Technology of Taiwan) MOST 111-2628-M-019-001-MY3Ministry of Science and Technology, Taiwan (Ministry of Science and Technology of Taiwan) MOST 113-2119-M-001-011
6 · The paper itself

Abstract

Meretrix is a commercially valuable bivalve genus in Asia, but only one reference genome has hindered comprehensive genetic studies and germplasm resource evaluation. In this study, we present three reference genomes of Meretrix species: Meretrix sp. MF1, Meretrix sp. MT1, and Meretrix lamarckii JML1. Meretrix sp. MF1 was assembled at the chromosome level using Nanopore sequencing and Hi-C technologies, whereas Meretrix sp. MT1 and Meretrix lamarckii were assembled as scaffold-level assemblies. The chromosome-level genome of Meretrix sp. MF1 consists of 36 contigs, including 19 chromosomes and 17 scaffolds, with a total length of 883.3 Mb and a scaffold N50 of 46.87 Mb. Notably, the genome of Meretrix sp. MF1, a putative novel species, exhibits an Average Nucleotide Identity (ANI) of 94.33% with its closest relative, Meretrix lamarckii. These genomic resources not only provide a crucial foundation for genetic research on Meretrix but also contribute to the development of effective conservation strategies for its sustainable management.

Indexed as

BivalviaChromosomesGenomeAnimalsDatasets as TopicNanoporesNanopore Sequencing

Identifiers

PMID40610501
PMCPMC12229300

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.