Evidence map›Paper›PMID 40607815›Full record

ArticleDatabase : the journal of biological databases and curation2025

CAS: enhancing implicit constrained data augmentation with semantic enrichment for biomedical relation extraction and beyond.

Fang-Yi Su, Gia-Han Ngo, Ben Phan, Jung-Hsien Chiang

Abstract read
In one paragraph

Article in Database : the journal of biological databases and curation, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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1 · What the graph read from it

What it found

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2 · The registry

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3 · Its place in the literature

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4 · The record

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5 · Who and what money

Authors and funding

4 authors.

Fang-Yi SuDepartment of Computer Science and Information Engineering, National Cheng Kung University, Tainan City 701401, Taiwan.ORCID 0000-0002-9147-6973
Gia-Han NgoDepartment of Computer Science and Information Engineering, National Cheng Kung University, Tainan City 701401, Taiwan.ORCID 0009-0001-6229-0862
Ben PhanDepartment of Computer Science and Information Engineering, National Cheng Kung University, Tainan City 701401, Taiwan.ORCID 0009-0006-3048-356X
Jung-Hsien ChiangDepartment of Computer Science and Information Engineering, National Cheng Kung University, Tainan City 701401, Taiwan.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Biomedical relation extraction often involves datasets with implicit constraints, where structural, syntactic, or semantic rules must be strictly preserved to maintain data integrity. Traditional data augmentation techniques struggle in these scenarios, as they risk violating domain-specific constraints. To address these challenges, we propose CAS (Constrained Augmentation and Semantic-Quality), a novel framework designed for constrained datasets. CAS employs large language models to generate diverse data variations while adhering to predefined rules, and it integrates the SemQ Filter. This self-evaluation mechanism ensures the quality and consistency of augmented data by filtering out noisy or semantically incongruent samples. Although CAS is primarily designed for biomedical relation extraction, its versatile design extends its applicability to tasks with implicit constraints, such as code completion, mathematical reasoning, and information retrieval. Through extensive experiments across multiple domains, CAS demonstrates its ability to enhance model performance by maintaining structural fidelity and semantic accuracy in augmented data. These results highlight the potential of CAS not only in advancing biomedical NLP research but also in addressing data augmentation challenges in diverse constrained-task settings within natural language processing. Database URL: https://github.com/ngogiahan149/CAS.

Indexed as

Databases, FactualData MiningNatural Language ProcessingSemanticsHumans

Identifiers

PMID40607815
PMCPMC12224179

What OpenQuestion holds

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LicenceCC BY
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.