Evidence map›Paper›PMID 40606672›Full record

ArticleFrontiers in genetics2025

Whole genome sequencing and functional annotation of

Sanjay Kharte, Ashish Kumar, Priyamvada Mishra, R S Ramakrishnan, Stuti Sharma, Nishi Mishra, Puneet Singh Chauhan, Radheshyam Sharma, Vedant Gautam, Shweta Tiwari and 4 more

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Frontiers in genetics, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Towards a Phylogenomic Framework for theInternational journal of molecular sciences · 2026
    Article
  2. The endophyteFrontiers in microbiology · 2026
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Sanjay KharteDepartment of Plant Pathology, Jawaharlal Nehru Agricultural University, Jabalpur, Madhya Pradesh, India.
Ashish KumarDepartment of Plant Pathology, Jawaharlal Nehru Agricultural University, Jabalpur, Madhya Pradesh, India.
Priyamvada MishraCSIR-National Botanical Research Institute, Lucknow, Uttar Pradesh, India.
R S RamakrishnanDepartment of Plant Physiology, Jawaharlal Nehru Agricultural University, Jabalpur, Madhya Pradesh, India.
Stuti SharmaDepartment of Genetics and Plant Breeding, Jawaharlal Nehru Agricultural University, Jabalpur, Madhya Pradesh, India.
Nishi MishraSeed Technology Research Centre, Jawaharlal Nehru Agricultural University, Jabalpur, Madhya Pradesh, India.
Puneet Singh ChauhanCSIR-National Botanical Research Institute, Lucknow, Uttar Pradesh, India.
Radheshyam SharmaBiotechnology Centre, Jawaharlal Nehru Agricultural University, Jabalpur, Madhya Pradesh, India.
Vedant GautamDepartment of Plant Pathology, Jawaharlal Nehru Agricultural University, Jabalpur, Madhya Pradesh, India.
Shweta TiwariSeed Technology Research Centre, Jawaharlal Nehru Agricultural University, Jabalpur, Madhya Pradesh, India.
Vinod GoyalSeed Technology Research Centre, Jawaharlal Nehru Agricultural University, Jabalpur, Madhya Pradesh, India.
Sonu SharmaSeed Technology Research Centre, Jawaharlal Nehru Agricultural University, Jabalpur, Madhya Pradesh, India.
G K KoutuSeed Technology Research Centre, Jawaharlal Nehru Agricultural University, Jabalpur, Madhya Pradesh, India.
N K JoshiDepartment of Entomology and Plant Pathology, University of Arkansas, Fayetteville, AR, United States.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background: Methods: We performed whole-genome sequencing of Results: The genome assembly achieved 99% completeness, identifying 116,998 protein-coding genes. A total of 16,779 carbohydrate-active enzymes (CAZymes) could be detected, highlighting the pathogen's potential for plant cell wall degradation. Pathogenicity analysis revealed genes linked with moderate virulence. AntiSMASH detected 77 biosynthetic gene clusters (BGCs), including those encoding Type I polyketide synthases (T1PKS) and non-ribosomal peptide synthetases (NRPS), which may contribute to pathogenicity. Discussion: The comprehensive genomic analysis of

Indexed as

CAZymesFusarium oxysporum f. sp. lentisgene annotationhost-pathogen interactionsillumina shotgun sequencingpathogenicitysecondary metabolitesvirulence factors

Identifiers

PMID40606672
PMCPMC12213878

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.