Evidence map›Paper›PMID 40605009›Full record

ArticleMicrobiome2025

Adaptive strategies of Caribbean sponge holobionts beyond the mesophotic zone.

Benoît Paix, Alexane Thivet, Celso Domingos, Özlem Erol, Niels van der Windt, Young H Choi, Nicole J de Voogd

Abstract read
In one paragraph

Article in Microbiome, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Benoît PaixUMR CARRTEL, INRAE-Université Savoie Mont-Blanc, Thonon-Les-Bains, France. benoit.paix@gmail.com.
Alexane ThivetNaturalis Biodiversity Center, Leiden, The Netherlands.
Celso DomingosCIIMAR-Interdisciplinary Centre of Marine and Environmental Research, University of Porto, Avenida General Norton de Matos, S/N, Matosinhos, 4450-208, Portugal.
Özlem ErolInstitute of Biology (IBL), Leiden University, PO Box 9505, Leiden, 2333 BE, The Netherlands.
Niels van der WindtNaturalis Biodiversity Center, Leiden, The Netherlands.
Young H ChoiInstitute of Biology (IBL), Leiden University, PO Box 9505, Leiden, 2333 BE, The Netherlands.
Nicole J de VoogdNaturalis Biodiversity Center, Leiden, The Netherlands. n.j.de.voogd@biology.leidenuniv.nl.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundMarine sponges and their microbiomes function together as holobionts, playing essential roles in ecosystem dynamics and exhibiting remarkable adaptability across depth gradients. This study utilized a multi-omics approach, integrating microbiome and metabolome analyses, to investigate adaptive strategies in sponge holobionts inhabiting the mesophotic (80-125 m), upper-rariphotic (125-200 m), and lower-rariphotic (200-305 m) zones of Curaçao. We hypothesized that depth-related environmental factors drive distinct adaptive strategies, similar to patterns observed in fish and coral assemblages.

resultsResults revealed major differences in holometabolomes and microbial communities between Demospongiae and Hexactinellida sponges, reflecting class-specific adaptive strategies. Notably, phospholipid homeoviscous adaptation to temperature and pressure might emerge as a key mechanism in phosphorus metabolism. Adaptations in nitrogen metabolism were linked to diverse ammonia oxidizing archaea (AOA) symbionts, and dissolved organic matter cycling. Hexactinellid microbiomes exhibited intra-specific heterogeneity; however, species-specific associations with AOA symbionts such as Cenarchaeum and Nitrosopumilus were observed. Additionally, the lower-rariphotic hexactinellid holometabolomes highlighted the significance of the nested ecosystem concept through the identification of secondary metabolites produced by their associated fauna (aphrocallistins by zoanthids and xanthurenic acid by shrimp).

conclusionsThis study highlights the ecological significance of sponge holobionts in mesophotic and rariphotic ecosystems, revealing diverse adaptations to unique physicochemical conditions and biotic interactions. Video Abstract.

Indexed as

Adaptation, PhysiologicalMicrobiotaPoriferaAnimalsArchaeaBacteriaCaribbean RegionEcosystemMetabolomeNitrogenSymbiosisNitrogenAdaptive strategiesDemospongesDepthHexactinellidsMesophoticMetabolomeMicrobiomeMulti-omicsRariphoticSponges

Identifiers

PMID40605009
PMCPMC12220500

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.