Evidence map›Paper›PMID 40604401›Full record

ArticleBMC microbiology2025

Performance evaluation of the Biosynex AMPLIQUICK Fecal Bacteriology PCR kit.

Quentin Beaufils, Lucie Bénéjat, Astrid Ducournau, Johanna Aptel, Alicia Chevalier, Marine Jauvain, Philippe Lehours

Abstract readEvaluation Study
In one paragraph

Article in BMC microbiology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Quentin BeaufilsCHU de Bordeaux, CHU Pellegrin, Laboratoire de Bactériologie, CNR des Campylobacters et des Hélicobacters, Place Amélie Raba Léon, Bordeaux, France.
Lucie BénéjatCHU de Bordeaux, CHU Pellegrin, Laboratoire de Bactériologie, CNR des Campylobacters et des Hélicobacters, Place Amélie Raba Léon, Bordeaux, France.
Astrid DucournauCHU de Bordeaux, CHU Pellegrin, Laboratoire de Bactériologie, CNR des Campylobacters et des Hélicobacters, Place Amélie Raba Léon, Bordeaux, France.
Johanna AptelCHU de Bordeaux, CHU Pellegrin, Laboratoire de Bactériologie, CNR des Campylobacters et des Hélicobacters, Place Amélie Raba Léon, Bordeaux, France.
Alicia ChevalierLABM Cerballiance, Le Haillan, France.
Marine JauvainCHU de Bordeaux, CHU Pellegrin, Laboratoire de Bactériologie, CNR des Campylobacters et des Hélicobacters, Place Amélie Raba Léon, Bordeaux, France.
Philippe LehoursCHU de Bordeaux, CHU Pellegrin, Laboratoire de Bactériologie, CNR des Campylobacters et des Hélicobacters, Place Amélie Raba Léon, Bordeaux, France. philippe.lehours@u-bordeaux.fr.ORCID 0000-0001-6077-1825

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

This study assessed the clinical performance of the Biosynex AMPLIQUICK Fecal Bacteriology kit for detecting enteropathogenic bacteria in cases of acute community-acquired diarrhea. In total, 194 retrospectively collected and 207 prospectively collected stool samples were analyzed. In cases of discordant results between the AMPLIQUICK Fecal Bacteriology kit and initial status of the 401 stools, samples were reanalyzed using the Seegene Gastrointestinal Panel 1 and 2 kits or targeted PCR assays. Among the 401 samples, 190 were expected to be positive for Campylobacter spp. (C. jejuni or C. coli), 48 for Salmonella spp., 39 for Shigella spp./enteroinvasive Escherichia coli (EIEC), 21 for Yersinia enterocolitica, and 30 for enterohemorrhagic E. coli (EHEC). Additionally, 64 samples were expected to be negative. Nine other samples tested positive for either other enteropathogens (Aeromonas spp., Plesiomonas shigelloides, Vibrio spp., or Clostridioides difficile) or co-infections with two pathogens. Only three samples (four discrepancies) yielded discordant results with the AMPLIQUICK Fecal Bacteriology kit: one false positive for enterotoxigenic E. coli (ETEC), one false negative for EHEC, and one sample that was both falsely positive for Salmonella spp. and falsely negative for EHEC. The analytical performance was calculated using a composite reference standard (CRS) in the absence of a perfect gold standard. Due to the low number or absence of positive cases, the performance of the Biosynex AMPLIQUICK Fecal Bacteriology kit could not be determined for Vibrio spp., Yersinia pseudotuberculosis, hypervirulent C. difficile strains, Cholera toxin, ETEC, 0157 EHEC and P. shigelloides. Using this CRS, positive, negative and overall agreement rates ranged from 98.24 to 100% for all the other pathogens. In conclusion, the Biosynex AMPLIQUICK Fecal Bacteriology kit enables comprehensive screening for key bacterial pathogens associated with gastrointestinal infections in a single PCR assay. With excellent clinical performance, it represents a reliable tool for the rapid and accurate diagnosis of bacterial gastroenteritis in routine practice.

Indexed as

BacteriaBacteriological TechniquesDiarrheaFecesMolecular Diagnostic TechniquesPolymerase Chain ReactionReagent Kits, DiagnosticAdultChildChild, PreschoolHumansInfantMiddle AgedProspective StudiesRetrospective StudiesSensitivity and SpecificityReagent Kits, DiagnosticEnteropathogensStoolsSyndromic PCR

Identifiers

PMID40604401
PMCPMC12220677

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.