Evidence map›Paper›PMID 40604277›Full record

ArticleNature2025

Mapping and engineering RNA-driven architecture of the multiphase nucleolus.

Sofia A Quinodoz, Lifei Jiang, Aya A Abu-Alfa, Troy J Comi, Hongbo Zhao, Qiwei Yu, Lennard W Wiesner, Jordy F Botello, Anita Donlic, Elizabeth Soehalim and 7 more

Abstract read
In one paragraph

Article in Nature, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. RNA writes the nucleolus.Cell research · 2026
    Article
  9. Article
  10. Article
  11. Article
  12. The Polymers of Life: Exploring Cellular Function Through Polymer Concepts.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Review
  13. Article
  14. Resolving Sub-Nuclear Architecture from Compartments to Functional Domains.International journal of molecular sciences · 2026
    Review
  15. Article
  16. Nucleolar Dynamics During Oogenesis.bioRxiv : the preprint server for biology · 2026
    Article
  17. Direct roles of long non-coding RNAs in transcription activation.Nature structural & molecular biology · 2026
    Review
  18. Ribosome biogenesis bottlenecks reveal vulnerabilities in cancer.bioRxiv : the preprint server for biology · 2026
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

17 authors.

Sofia A Quinodoz *Department of Chemical and Biological Engineering, Princeton University, Princeton, NJ, USA.ORCID 0000-0003-1862-5204
Lifei Jiang *Department of Molecular Biology, Princeton University, Princeton, NJ, USA.ORCID 0009-0007-7291-8311
Aya A Abu-AlfaDepartment of Molecular Biology, Princeton University, Princeton, NJ, USA.ORCID 0009-0003-8569-2164
Troy J ComiOmenn-Darling Bioengineering Institute, Princeton University, Princeton, NJ, USA.ORCID 0000-0002-3215-4026
Hongbo ZhaoDepartment of Chemical and Biological Engineering, Princeton University, Princeton, NJ, USA.
Qiwei YuLewis-Sigler Institute for Integrative Genomics, Princeton, NJ, USA.ORCID 0000-0003-0610-3484
Lennard W WiesnerDepartment of Chemical and Biological Engineering, Princeton University, Princeton, NJ, USA.ORCID 0000-0001-7161-4358
Jordy F BotelloDepartment of Molecular Biology, Princeton University, Princeton, NJ, USA.ORCID 0000-0002-0163-0595
Anita DonlicDepartment of Chemical and Biological Engineering, Princeton University, Princeton, NJ, USA.
Elizabeth SoehalimOmenn-Darling Bioengineering Institute, Princeton University, Princeton, NJ, USA.
Prashant BhatDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, USA.ORCID 0000-0003-3832-4871
Christiane ZorbasRNA Molecular Biology, Fonds de la Recherche Scientifique (F.R.S./FNRS), Université libre de Bruxelles (ULB), Gosselies, Belgium.ORCID 0000-0002-1861-3644
Ludivine WacheulRNA Molecular Biology, Fonds de la Recherche Scientifique (F.R.S./FNRS), Université libre de Bruxelles (ULB), Gosselies, Belgium.ORCID 0000-0002-0443-8865
Andrej KošmrljDepartment of Mechanical and Aerospace Engineering, Princeton, NJ, USA.ORCID 0000-0001-6137-9200
Denis L J LafontaineRNA Molecular Biology, Fonds de la Recherche Scientifique (F.R.S./FNRS), Université libre de Bruxelles (ULB), Gosselies, Belgium. denis.lafontaine@ulb.be.ORCID 0000-0001-7295-6288
Sebastian KlingeLaboratory of Protein and Nucleic Acid Chemistry, The Rockefeller University, New York, NY, USA. klinge@rockefeller.edu.ORCID 0000-0002-9373-4737
Clifford P BrangwynneDepartment of Chemical and Biological Engineering, Princeton University, Princeton, NJ, USA. cbrangwy@princeton.edu.ORCID 0000-0002-1350-9960

Funding

UCLA-Caltech Medical Scientist Training ProgramT32GM008042 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI AJIJOLA, OLUJIMI A, DAWSON, DAVID WAYNE · 1985 to 2023
$29.9M
PREDOCTORAL TRAINING IN BIOLOGY AND CHEMISTRYT32GM007616 · NIGMS · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI STERNBERG, PAUL WARREN · 1985 to 2019
$22.9M
UCLA-Caltech Medical Scientist Training ProgramT32GM152342 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI Olujimi A Ajijola, David Wayne Dawson · 2024 to 2026
$5.3M
Assembly of the eukaryotic small ribosomal subunitR01GM145950 · NIGMS · ROCKEFELLER UNIVERSITY · PI KLINGE, SEBASTIAN · 2022 to 2024
$1.0M
Assembly of the eukaryotic large ribosomal subunitR01GM143181 · NIGMS · ROCKEFELLER UNIVERSITY · PI KLINGE, SEBASTIAN · 2022 to 2023
$678k
Determining the function and mechanism of the MALAT1 long non-coding RNA in co-transcriptional splicingF30CA247447 · NCI · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI BHAT, PRASHANT · 2020 to 2021
$102k
NCI NIH HHS F30 CA247447NIGMS NIH HHS R01 GM143181NIGMS NIH HHS R01 GM145950NIGMS NIH HHS T32 GM007616NIGMS NIH HHS T32 GM008042NIGMS NIH HHS T32 GM152342
6 · The paper itself

Abstract

Biomolecular condensates are key features of intracellular compartmentalization

Indexed as

Cell NucleolusRNA Processing, Post-TranscriptionalRNA, RibosomalDNA, RibosomalHumansDNA, RibosomalRNA, Ribosomal

Identifiers

PMID40604277
PMCPMC12350172

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.