Evidence map›Paper›PMID 40603415›Full record

ArticleScientific reports2025

From pollution to reforestation: the hidden microbiome of Alnus glutinosa nodules over 30 years.

Ryan Michael Thompson, Maria Del Carmen Montero-Calasanz, David George, Edward M Fox

Abstract read
In one paragraph

Article in Scientific reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. International journal of systematic and evolutionary microbiology · 2026
    Article
  3. Article
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Ryan Michael ThompsonSchool of Natural and Environmental Sciences, Newcastle University, Newcastle upon Tyne, NE1 7RU, UK. R.Thompson12@newcastle.ac.uk.
Maria Del Carmen Montero-CalasanzSchool of Natural and Environmental Sciences, Newcastle University, Newcastle upon Tyne, NE1 7RU, UK.
David GeorgeSchool of Natural and Environmental Sciences, Newcastle University, Newcastle upon Tyne, NE1 7RU, UK.
Edward M FoxDepartment of Applied Sciences, Northumbria University, Newcastle upon Tyne, NE1 8ST, UK.

Funding

Natural Environment Research Council NE/S007512/1Spanish Ministry of Economy, Industry and Competitiveness (MINECO) RYC2019-028468-I
6 · The paper itself

Abstract

Actinorhizal plants, such as Alnus glutinosa, play a critical role in ecosystem restoration, particularly in metal-contaminated soils, yet their nodule microbiome remains largely unexplored beyond Frankiaceae endosymbionts. This study presents the first comprehensive analysis of A. glutinosa root nodules under heavy metal stress, focusing on a 30-year-old chronosequence planted upon opencast coal mine spoil. Microbial diversity analysis revealed that A. glutinosa nodules harbour a distinct and conserved microbiome, dominated by Frankiaceae but also enriched with plant growth-promoting bacteria such as Bradyrhizobium, Mycobacterium, and Actinoplanes. Additionally, despite similar beta diversity between the nodules and soil, significant compositional differences were observed, reinforcing the selective nature of the nodules. However, functional profiling indicated that metabolic pathways were largely shared between nodule and soil microbiomes. Overall, this study provides new insights into the resilience and specialisation of the A. glutinosa nodule microbiome and its potential role in bioremediation within heavy metal-contaminated environments.

Indexed as

AlnusMicrobiotaRoot Nodules, PlantBiodegradation, EnvironmentalMetals, HeavySoil MicrobiologySoil PollutantsMetals, HeavySoil PollutantsActinorhizalEndosymbiosisFrankiaceaePhytoremediationPollutants

Identifiers

PMID40603415
PMCPMC12222880

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.