Evidence map›Paper›PMID 40601239›Full record

ArticleJournal of applied genetics2026

Genome-wide identification of genetic determinants for gall midge resistance in rice using genic markers.

Basana Gowda Gadratagi, Lopamudra Mandal, Rameswar Prasad Sah, Anilkumar C, Guru-Pirasanna-Pandi G, Naveenkumar B Patil, Nandini Sahu, Muhammed Azharudheen T P, Sasmita Behera, Prakash Chandra Rath and 1 more

Abstract read
PubMed Publisher
In one paragraph

Article in Journal of applied genetics, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Basana Gowda GadratagiCrop Protection Division, ICAR-Central Rice Research Institute, Cuttack, Odisha, 753006, India. basanagowda4099@gmail.com.ORCID http://orcid.org/0000-0002-3136-5999
Lopamudra Mandal *Crop Protection Division, ICAR-Central Rice Research Institute, Cuttack, Odisha, 753006, India.
Rameswar Prasad Sah *Crop Improvement Division, ICAR-Central Rice Research Institute, Cuttack, Odisha, 753006, India.
Anilkumar C *Crop Improvement Division, ICAR-Central Rice Research Institute, Cuttack, Odisha, 753006, India.
Guru-Pirasanna-Pandi GCrop Protection Division, ICAR-Central Rice Research Institute, Cuttack, Odisha, 753006, India.
Naveenkumar B PatilCrop Protection Division, ICAR-Central Rice Research Institute, Cuttack, Odisha, 753006, India.
Nandini SahuDepartment of Entomology, College of Agriculture, Odisha University of Agriculture and Technology (OUAT), Surya Nagar, Bhubaneswar, Odisha, 751003, India.
Muhammed Azharudheen T PCrop improvement and Biotechnology Division, ICAR-Indian Institute of Spices Research, Kozhikode, Kerala, 673012, India.
Sasmita BeheraCrop Improvement Division, ICAR-Central Rice Research Institute, Cuttack, Odisha, 753006, India.
Prakash Chandra RathCrop Protection Division, ICAR-Central Rice Research Institute, Cuttack, Odisha, 753006, India.
Shyamaranjan Das MohapatraCrop Protection Division, ICAR-Central Rice Research Institute, Cuttack, Odisha, 753006, India.

Funding

ICAR-NRRI, Cuttack, India In-house Project 3.1/2020-2025 scheme
6 · The paper itself

Abstract

The Asian rice gall midge poses a severe threat to rice yields, making the development of resistant rice cultivars the most cost-effective and efficient strategy to manage the gall midge. A diverse panel of 115 rice accessions was phenotyped, revealing varying resistance to the gall midge biotype 2. The panel's diversity and familial relatedness were assessed before conducting a genome-wide association study to identify marker-trait associations (MTAs) for gall midge resistance. Newly developed candidate gene-derived markers were used along with random microsatellite markers in genotyping. A total of 50 significant MTAs with P < 0.05 were found. Except for chromosome 11, all of the rice chromosomes had significant MTAs. The QTL identified on chromosomes 6, 8, and 9 has been associated with 66F 67R, 54F 55R, and RM107, explaining maximum phenotypic variation. The allele effects of the associated markers differentiated susceptible and highly resistant genotypes, confirming their association with gall midge resistance. Seven genes associated with the general response to stress tolerance were found in the gall midge resistance QTL region. On chromosome 9, one putative gene for gall midge resistance was identified, which is associated with marker RM23914. These candidate genes identified have a significant impact on the gall midge resistance response. This investigation contributes to a better understanding of the rice gall midge resistance mechanism and provides essential genetic information for the breeding and functional verification of resistant cultivars.

Indexed as

Disease ResistanceOryzaPlant DiseasesAnimalsChromosome MappingChromosomes, PlantGenetic MarkersGenome, PlantGenome-Wide Association StudyGenotypeMicrosatellite RepeatsPhenotypeQuantitative Trait LociGenetic MarkersCandidate genesEfficient mixed-model associationsGall midgeMarker-assisted breedingResistance response

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.