Evidence map›Paper›PMID 40598114›Full record

ArticleBMC biotechnology2025

Unconventional semi-solid cultivation enhances cytochalasins production by the Colombian fungus Xylaria sp. CM-UDEA-H199.

Daniela Valencia-Revelo, Esteban Charria-Girón, Katharina Schmidt, Silke Reinecke, Aida M Vasco-Palacios, Theresia Stradal, Yasmina Marin-Felix, Nelson H Caicedo-Ortega, Sherif S Ebada

Abstract read
In one paragraph

Article in BMC biotechnology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Daniela Valencia-ReveloDepartment Microbial Drugs, Helmholtz Centre for Infection Research (HZI), Inhoffenstrasse 7, 38124, Braunschweig, Germany.
Esteban Charria-GirónDepartment Microbial Drugs, Helmholtz Centre for Infection Research (HZI), Inhoffenstrasse 7, 38124, Braunschweig, Germany.
Katharina SchmidtDepartment of Cell Biology, Helmholtz Centre for Infection Research (HZI), Inhoffenstrasse 7, 38124, Braunschweig, Germany.
Silke ReineckeDepartment Microbial Drugs, Helmholtz Centre for Infection Research (HZI), Inhoffenstrasse 7, 38124, Braunschweig, Germany.
Aida M Vasco-PalaciosGrupo de Microbiología Ambiental y Grupo BioMicro, Escuela de Microbiología, Universidad de Antioquia UdeA, Calle 67 No. 53-108, Medellín, Colombia.
Theresia StradalDepartment of Cell Biology, Helmholtz Centre for Infection Research (HZI), Inhoffenstrasse 7, 38124, Braunschweig, Germany.
Yasmina Marin-FelixDepartment Microbial Drugs, Helmholtz Centre for Infection Research (HZI), Inhoffenstrasse 7, 38124, Braunschweig, Germany.
Nelson H Caicedo-OrtegaDepartamento de Ciencias Biológicas, Bioprocesos y Biotecnología. Facultad de Ingeniería, Diseño y Ciencias Aplicadas, Universidad Icesi, Calle 18 No. 122-135, Cali, Colombia. nhcaicedo@icesi.edu.co.
Sherif S EbadaDepartment Microbial Drugs, Helmholtz Centre for Infection Research (HZI), Inhoffenstrasse 7, 38124, Braunschweig, Germany. sherif.elsayed@helmholtz-hzi.de.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Fungal species of the order Xylariales, particularly those from tropical and untapped areas like the Amazon region, denote an intriguing reservoir of biodiversity and chemically varied metabolites. Based on this potential and by implementing the One Strain Many Compounds (OSMAC) approach, herein we have cultivated a Colombian Xylaria strain in several liquid, solid or semi-solid media, under different nutrient compositions and culture conditions. Metabolomic studies of Xylaria sp. CM-UDEA-H199 across these conditions led to the isolation of diverse metabolites. Six compounds were purified from rice (BRFT) cultures, identified as griseofulvin (1), xylaropyrones B/C (2/3), akolitserin (4), hypoxylin A (5), and (-)-(R)-5-(methoxycarbonyl)mellein (6). Three compounds were isolated from liquid YM cultivation: 2-hexylidene-3-methylsuccinic acid (7), its 4-methyl ester (8), and akoenic acid (9). Notably, cultivation in the newly designed semi-solid (S-BRFT) medium significantly altered the metabolome, leading to the predominant production of cytochalasins, with five derivatives (10-14) purified and structurally characterized.Among the isolated cytochalasins, compound 12 was identified as a previously undescribed natural diepoxy derivative of cytochalasin D. Structure elucidation of all isolated compounds was achieved based on their MS and comprehensive 1D/2D NMR analyses in addition to comparisons with the reported literature. Compounds 4-6, 10 and 11 revealed mild antifungal activity, while compounds (1, 5, 6, 8, 10, 11, 13 and 14) exhibited cytotoxic activity, with hypoxylin A (5) being the most potent, displaying IC

Indexed as

CytochalasinsXylarialesColombiaCulture MediaHumansMetabolomicsOryzaCulture MediaCytochalasinsActin disruptionCytochalasinsMetabolomicsNutrient limitationXylariales

Identifiers

PMID40598114
PMCPMC12220629

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.