Evidence map›Paper›PMID 40597655›Full record

ArticleBMC genomic data2025

Genome assembly of the Bos gaurus in Vietnam using nanopore sequencing.

Thi Dieu Thuy Nguyen, Thi Binh Nguyen Tran, Loan T Nguyen

Abstract read
In one paragraph

Article in BMC genomic data, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Thi Dieu Thuy NguyenInstitute of Biology, Vietnam Academy of Science and Technology, Hanoi, Vietnam. ntdthuy@ibt.ac.vn.
Thi Binh Nguyen TranFaculty of Biotechnology, Vietnam National University of Agriculture, Hanoi, Vietnam.
Loan T NguyenQueensland Alliance for Agriculture and Food Innovation, The University of Queensland, Brisbane, Australia. t.nguyen3@uq.edu.au.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

objectivesThe gaur (Bos gaurus) is one of the largest wild cattle species in the Bovidae family and is among the most threatened mammals in Vietnam. Listed as vulnerable on the IUCN Red List since 1986, gaurs are found in various provinces across Vietnam, including Lai Chau, Son La, Thanh Hoa, Nghe An, and several others. Their population has drastically declined, with current estimates showing about 30-50 individuals in the Northwest and fewer than 300 in the Central Highlands. Conservation efforts are crucial, and genome assembly is vital, providing valuable information for effective conservation strategies. DATA DESCRIPTION: Using Oxford Nanopore sequencing technologies, this study generated over 49 Giga-bases of trimmed whole genome sequencing reads from the muscle tissue of a deceased gaur collected in 2014 in Quang Nam, Vietnam. These reads were assembled into a 2.61 Gb draft genome, comprising 32,004 contigs, 54 scaffolds, with an N50 of 324.5 kilobases and a GC content of 41.86%. The BUSCO completeness value, using the mammalia_odb10 dataset, was 83.4%. This Vietnamese gaur genome assembly will serve as a valuable resource for conservation genetic research in this species.

Indexed as

GenomeNanopore SequencingRuminantsAnimalsGenomicsSequence Analysis, DNAVietnamWhole Genome SequencingBos gaurusGenome assemblyLong readsNanopore sequencingVietnam

Identifiers

PMID40597655
PMCPMC12219697

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.