Evidence map›Paper›PMID 40597597›Full record

ArticleBMC genomics2025

An insight into the draft genome of the Oriental rat flea, Xenopsylla cheopis, together with its Wolbachia endosymbiont.

Stephen Lu, David M Bland, Eric Dahlstrom, Neelam Redekar, Melina G Guizzo, Kent Barbian, B Joseph Hinnebusch, José M C Ribeiro

Abstract read
In one paragraph

Article in BMC genomics, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Stephen Lu *Section of Vector Biology, Laboratory of Malaria and Vector Research, National Institute of Allergy and Infectious Diseases, National Institutes of Health, 12735 Twinbrook Parkway, Room 2E-28, Twinbrook III Building, MSC 8132, Bethesda, MD, 20892-8132, USA.
David M Bland *Laboratory of Bacteriology, Rocky Mountain Laboratories, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Hamilton, MT, 59840, USA.
Eric DahlstromGenomics Unit, Research Technologies Branch, Rocky Mountain Laboratories, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Hamilton, MT, 59840, USA.
Neelam RedekarIntegrated Data Sciences Section, Research Technologies Branch, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, 20892, USA.
Melina G GuizzoSection of Vector Biology, Laboratory of Malaria and Vector Research, National Institute of Allergy and Infectious Diseases, National Institutes of Health, 12735 Twinbrook Parkway, Room 2E-28, Twinbrook III Building, MSC 8132, Bethesda, MD, 20892-8132, USA.
Kent BarbianGenomics Unit, Research Technologies Branch, Rocky Mountain Laboratories, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Hamilton, MT, 59840, USA.
B Joseph HinnebuschLaboratory of Bacteriology, Rocky Mountain Laboratories, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Hamilton, MT, 59840, USA.
José M C RibeiroSection of Vector Biology, Laboratory of Malaria and Vector Research, National Institute of Allergy and Infectious Diseases, National Institutes of Health, 12735 Twinbrook Parkway, Room 2E-28, Twinbrook III Building, MSC 8132, Bethesda, MD, 20892-8132, USA. jribeiro@niaid.nih.gov.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe Oriental rat flea, Xenopsylla cheopis, is a main vector of plague caused by the bacterium Yersinia pestis. Transcriptomic analysis of this insect and the interaction between Yersinia and the flea digestive tract have been the subject of several studies. However, to develop more refined studies on this vector in the future, we sequence and describe a draft genome of the rat flea Xenopsylla cheopis, discuss the physiological implications of its genetic features, and compare them with the only other sequenced member of the Siphonaptera, the cat flea, Ctenocephalides felis.

resultsSequencing data from both long and short reads were assembled into 7,694 contigs, from which 95,638 putative coding sequences (CDSs) were extracted and functionally annotated, providing insights into various aspects of flea physiology. This includes the identification of putative salivary proteins, such as acid phosphatases and FS-H/I, associated with blood acquisition; classification of multiple serine peptidases likely representing the primary digestive enzymes of X.cheopis; and the identification of all enzymes involved in heme biosynthesis, as well as heme oxygenases and unique heme-binding proteins potentially involved in heme detoxification. Comparison of detoxification-related genes-namely those in the cytochrome P450, carboxylesterase, and glutathione S-transferase families-with homologs from the cat flea (C. felis) revealed the presence of a platelet-activating factor (PAF) acetyl hydrolase that appears to be unique to rat fleas, cat fleas, and human head and body lice, but is absent in other blood-feeding arthropods. Additionally, we identified key components of immune-related pathways known from other arthropods, including the Toll, IMD, and JAK/STAT pathways. Finally, a contig encoding a novel bacterium was discovered within the assembled flea genome. Phylogenetic analysis of the Wolbachia endosymbiont in X. cheopis suggests it is closely related to the Wolbachia strain found in Drosophila melanogaster.

conclusionsThe disclosure of the X. cheopis genome, together with its Wolbachia symbiont, should advance research on the biology of this vector.

Indexed as

Genome, InsectSymbiosisWolbachiaXenopsyllaAnimalsPhylogenyRatsFleaGenomePlagueSymbiontWolbachiaXenopsylla cheopis

Identifiers

PMID40597597
PMCPMC12211885

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.