Evidence map›Paper›PMID 40596827›Full record

ArticleBMC genomics2025

Phylogenetic analysis, gene rearrangement and divergence time estimation of Patellogastropoda (Mollusca, Gastropoda) based on complete mitochondrial genomes.

Wanting Liu, Alexei V Chernyshev, Jiji Li, Yingying Ye, Xiangli Dong

Abstract read
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Article in BMC genomics, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

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1 citing paper in PubMed.

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5 · Who and what money

Authors and funding

5 authors.

Wanting LiuNational Engineering Research Center for Marine Aquaculture, Zhejiang Ocean University, Zhoushan, 316022, China.
Alexei V ChernyshevA.V. Zhirmunsky National Scientific Center of Marine Biology, Far Eastern Branch, Russian Academy of Sciences, Vladivostok, 690041, Russia.
Jiji LiNational Engineering Research Center for Marine Aquaculture, Zhejiang Ocean University, Zhoushan, 316022, China.
Yingying YeNational Engineering Research Center for Marine Aquaculture, Zhejiang Ocean University, Zhoushan, 316022, China. yeyy@zjou.edu.cn.
Xiangli DongNational Engineering Research Center for Marine Aquaculture, Zhejiang Ocean University, Zhoushan, 316022, China. dongxiangli@zjou.edu.cn.

Funding

the General scientific research projects of the Zhejiang Provincial Education Department Y202353900the National Key R&D Program of China 2019YFD0901204the NSFC Projects of International Cooperation and Exchanges 42020104009the Project of Bureau of Science and Technology of Zhoushan No. 2021C21017
6 · The paper itself

Abstract

backgroundPatellogastropoda, or true limpets, is a major taxonomic group within the Gastropoda, Mollusca. The complete mitochondrial genomes have been widely used to study the phylogenetic relationships of Patellogastropoda. To further enhance the understanding of the phylogenetic relationships among families within this subclass, we obtained the complete mitochondrial genome sequences of five species using third-generation sequencing technology: Limalepeta lima, Lepeta kuragiensis, Lottia versicolor, Lottia instabilis, and Lottia tenuisculpta. We examined mitochondrial genome structure, nucleotide composition and skew, as well as amino acid content and codon usage. Additionally, we assessed selective pressures on protein-coding genes in Lepetidae and Lottiidae species, constructed a phylogenetic tree for Patellogastropoda, analyzed gene arrangement, and estimated the divergence times within Patellogastropoda.

resultsThe mitochondrial genomes of these five species all encoded 38 genes. They exhibited a higher AT base content, and the protein-coding genes were under purifying selection. The Patellogastropoda was divided into two clades: Clade 1 included a part of the Lottioidea superfamily and the Patelloidea superfamily, whereas the Lottiidae family within the Lottioidea superfamily formed a separate clade (Clade 2). The mitochondrial genomes of the Patellogastropoda exhibited extensive gene rearrangements, particularly those in Lottiidae, which were the most complex. The Patellogastropoda lineage was estimated to have originated in the Paleozoic Permian era, with active differentiation occurring in the Mesozoic Cretaceous and the Cenozoic era.

conclusionsOur research results contribute to a better understanding of the phylogenetic relationships within the Patellogastropoda, and reveal the extensive gene rearrangements, providing further insights into the evolution and genetics of gastropods.

Indexed as

GastropodaGene RearrangementGenome, MitochondrialPhylogenyAnimalsBase CompositionEvolution, MolecularDivergence timeGene arrangementMitochondrial genomePatellogastropodaPhylogeny

Identifiers

PMID40596827
PMCPMC12210525

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