Evidence map›Paper›PMID 40595660›Full record

ArticleNPJ Regenerative medicine2025

Single cell transcriptomics of human kidney organoid endothelium reveals vessel growth processes and arterial maturation upon transplantation.

Marije Koning, Sébastien J Dumas, Elda Meta, Ellen Lievers, Annemarie M A de Graaf, Mila Borri, Lynn J Nai Chung Tong, Xue Liang, Ping Liu, Fang Chen and 5 more

Abstract read
In one paragraph

Article in NPJ Regenerative medicine, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Angiogenesis in Lung Regeneration and Aging.Arteriosclerosis, thrombosis, and vascular biology · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Marije Koning *Department of Internal Medicine - Nephrology, Leiden University Medical Center, Leiden, The Netherlands.
Sébastien J Dumas *Department of Internal Medicine - Nephrology, Leiden University Medical Center, Leiden, The Netherlands.
Elda MetaLaboratory of Angiogenesis and Vascular Metabolism, Department of Oncology and Leuven Cancer Institute (LKI), KU Leuven, VIB Center for Cancer Biology, VIB, Leuven, 3000, Belgium.
Ellen LieversDepartment of Internal Medicine - Nephrology, Leiden University Medical Center, Leiden, The Netherlands.
Annemarie M A de GraafDepartment of Internal Medicine - Nephrology, Leiden University Medical Center, Leiden, The Netherlands.
Mila BorriLaboratory of Angiogenesis and Vascular Metabolism, Department of Oncology and Leuven Cancer Institute (LKI), KU Leuven, VIB Center for Cancer Biology, VIB, Leuven, 3000, Belgium.
Lynn J Nai Chung TongDepartment of Internal Medicine - Nephrology, Leiden University Medical Center, Leiden, The Netherlands.
Xue LiangLars Bolund Institute of Regenerative Medicine, Qingdao-Europe Advanced Institute for Life Sciences, BGI Research, Qingdao, China.
Ping LiuMGI, BGI-Shenzhen, Shenzhen, China.
Fang ChenMGI, BGI-Shenzhen, Shenzhen, China.
Lin LinDepartment of Biomedicine, Aarhus University, Aarhus, Denmark.
Yonglun LuoLars Bolund Institute of Regenerative Medicine, Qingdao-Europe Advanced Institute for Life Sciences, BGI Research, Qingdao, China.
Peter CarmelietLaboratory of Angiogenesis and Vascular Metabolism, Department of Oncology and Leuven Cancer Institute (LKI), KU Leuven, VIB Center for Cancer Biology, VIB, Leuven, 3000, Belgium.
Cathelijne W van den BergDepartment of Internal Medicine - Nephrology, Leiden University Medical Center, Leiden, The Netherlands.
Ton J RabelinkDepartment of Internal Medicine - Nephrology, Leiden University Medical Center, Leiden, The Netherlands. a.j.rabelink@lumc.nl.

Funding

Agence Nationale de la Recherche ANR24-CPJ1-0181-01European Research Council ERC Advanced Research Grant EU-101055155Fonds voor Wetenschappelijk Onderzoek FWO - 11A1520N|11A1522NFund for Scientific Research-Flanders FWO-VlaanderenLong-term structural Methusalem funding from the Flemish government METH.14.08Lundbeck Foundation R396-2022-350Novo Nordisk Foundation NNF21CC0073729Novo Nordisk Foundation NNF21OC0071718Novo Nordisk Foundation NNF21OC0072031
6 · The paper itself

Abstract

Kidney organoids derived from human induced pluripotent stem cells lack a proper vasculature, hampering their applicability. Transplantation prevents the loss of organoid endothelial cells (ECs) observed in vitro, and promotes vascularization. In this study, we transplanted kidney organoids in chicken embryos and deployed single-cell RNA sequencing of ~12,000 organoid ECs to delineate their molecular landscape and identify key changes associated with transplantation. Transplantation significantly altered EC phenotypic composition. Consistent with angiogenesis, proliferating EC populations expanded 8 days after transplantation. Importantly, ECs underwent a major vein-to-arterial phenotypic shift. One of the transplantation-specific arterial EC populations, characterized by laminar shear stress response and Notch signalling, showed a similar transcriptome as human fetal kidney arterial/afferent arteriolar ECs. Consistently, transplantation-induced transcriptional changes involved proangiogenic and arteriogenic SOX7 transcription factor upregulation and regulon enrichment. These findings point to blood flow and candidate transcription factors such as SOX7 as possible targets to enhance kidney organoid vascularization.

Identifiers

PMID40595660
PMCPMC12216864

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.