Evidence map›Paper›PMID 40595486›Full record

ArticleNature communications2025

Deficits in mitochondrial dynamics and iron balance result in templated insertions.

Jordan Fox, Yang Yu, Yang Yu, Pilendra Thakre, Chloe Fox, Qian Li, Yunxia Wang, Adam Hughes, Xin Wang, Kaifu Chen and 1 more

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Jordan Fox *Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.ORCID http://orcid.org/0000-0001-7171-7365
Yang Yu *Department of Cardiology, Boston Children's Hospital, Boston, MA, USA.
Yang YuDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.
Pilendra ThakreDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.
Chloe FoxDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.ORCID http://orcid.org/0009-0006-3443-1361
Qian LiDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.
Yunxia WangDepartment of Cardiology, Boston Children's Hospital, Boston, MA, USA.
Adam HughesDepartment of Biochemistry, University of Utah School of Medicine, Salt Lake City, UT, USA.ORCID http://orcid.org/0000-0002-7095-3793
Xin WangDepartment of Cardiology, Boston Children's Hospital, Boston, MA, USA. xin.wang@nationwidechildrens.org.ORCID http://orcid.org/0000-0003-1456-335X
Kaifu ChenDepartment of Cardiology, Boston Children's Hospital, Boston, MA, USA. kaifu.chen@childrens.harvard.edu.ORCID http://orcid.org/0000-0003-1009-4357
Grzegorz IraDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA. gira@bcm.edu.ORCID http://orcid.org/0000-0001-5996-1138

Funding

Regulation of DNA recombination in Saccharomyces cerevisiaeR01GM080600 · NIGMS · BAYLOR COLLEGE OF MEDICINE · PI IRA, GRZEGORZ A · 2007 to 2024
$5.5M
The Role of the Lysosome in AgingR01AG061376 · NIA · UTAH STATE HIGHER EDUCATION SYSTEM--UNIVERSITY OF UTAH · PI Adam Hughes · 2018 to 2026
$3.3M
Regulation of Initial Steps of Chromosomal Breaks RepairR01GM125650 · NIGMS · BAYLOR COLLEGE OF MEDICINE · PI IRA, GRZEGORZ A · 2018 to 2025
$2.9M
Reversal of Heart Failure: Role of Vascular RecoveryR01HL148338 · NHLBI · METHODIST HOSPITAL RESEARCH INSTITUTE · PI CHEN, KAIFU, COOKE, JOHN P · 2020 to 2023
$2.8M
Bioinformatics Techniques to Analyze Dynamic Changes of 3D GenomeR01GM138407 · NIGMS · BOSTON CHILDREN'S HOSPITAL · PI CHEN, KAIFU · 2022 to 2025
$1.8M
Role of S-nitrosylation in TransdifferentiationR01HL133254 · NHLBI · METHODIST HOSPITAL RESEARCH INSTITUTE · PI CHEN, KAIFU, COOKE, JOHN P · 2018 to 2021
$1.6M
Mechanism and Regulation of DNA RecombinationR35GM158251 · NIGMS · BAYLOR COLLEGE OF MEDICINE · PI Grzegorz A Ira · 2025 to 2026
$1.1M
NIGMS NIH HHS R01 GM080600NIGMS NIH HHS R01 GM125650NIGMS NIH HHS R35 GM158251U.S. Department of Health & Human Services | National Institutes of Health (NIH) GM080600U.S. Department of Health & Human Services | National Institutes of Health (NIH) GM125650U.S. Department of Health & Human Services | National Institutes of Health (NIH) R01AG061376U.S. Department of Health & Human Services | National Institutes of Health (NIH) R01GM138407U.S. Department of Health & Human Services | National Institutes of Health (NIH) R01HL133254U.S. Department of Health & Human Services | National Institutes of Health (NIH) R01HL148338
6 · The paper itself

Abstract

Mitochondrial membrane dynamics control the shape, number, and distribution of mitochondria and regulate energy production and cell health. In a screen for yeast mutants with increased levels of templated insertions (~10-1000 bp) in the nuclear genome, we identified mitochondrial fusion deficient mutants (mgm1Δ, ugo1Δ, fzo1Δ). We found that fusion mutants activate the iron regulon, have decreased iron-sulfur clusters (ISCs), and increased DNA damage, suggesting a role of iron homeostasis in preventing insertions. Consistently, a secondary screen found mutants affecting iron-sulfur cluster production (yfh1Δ, grx5Δ), vacuolar iron storage (ccc1Δ) or general iron homeostasis (aft1Δ) to exhibit high insertion levels. Treatment with iron chelators or hydrogen peroxide also increased insertions. We propose that iron dysregulation leading to oxidative DNA damage and compromised DNA repair drives insertions. These studies suggest that severe iron imbalance, associated with many human diseases and pharmacological treatments, can trigger genome instability in the form of templated insertions.

Indexed as

IronMitochondriaMitochondrial DynamicsMutagenesis, InsertionalSaccharomyces cerevisiaeDNA DamageDNA RepairGenomic InstabilityHomeostasisHydrogen PeroxideIron-Sulfur ProteinsMutationSaccharomyces cerevisiae ProteinsTranscription FactorsAFT1 protein, S cerevisiaeHydrogen PeroxideIronIron-Sulfur ProteinsSaccharomyces cerevisiae ProteinsTranscription Factors

Identifiers

PMID40595486
PMCPMC12214859

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.