Evidence map›Paper›PMID 40595325›Full record

ArticleScientific reports2025

Identification of CXCR4 as a potential preventive gene in clear cell renal cell carcinoma from machine learning and immune analysis.

Fengming Hu, Xiao Wang, Runsheng Wu, Sihong Liu, Hongli Liu, Ranran Dai

Abstract read
In one paragraph

Article in Scientific reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Fengming Hu *Department of Urology, Shenzhen Pingle Orthopedic Hospital (Shenzhen Pingshan Traditional Chinese Medicine Hospital), Shenzhen, 518118, Guangdong, China.
Xiao Wang *Department of Organ Transplantation, The Affiliated Guangdong Second Provincial General Hospital of Jinan University, Guangzhou, Guangdong, China.
Runsheng WuDepartment of Urology, Shenzhen Pingle Orthopedic Hospital (Shenzhen Pingshan Traditional Chinese Medicine Hospital), Shenzhen, 518118, Guangdong, China.
Sihong LiuDepartment of Urology, Huidong People's Hospital, Huizhou, Guangdong, China.
Hongli LiuDepartment of Nephrology, The Affiliated Guangdong Second Provincial General Hospital of Jinan University, Guangzhou, Guangdong, China. liuhongli228@163.com.
Ranran DaiDepartment of Urology, Shenzhen Pingle Orthopedic Hospital (Shenzhen Pingshan Traditional Chinese Medicine Hospital), Shenzhen, 518118, Guangdong, China. 1547909986@qq.com.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Clear cell renal cell carcinoma (ccRCC) represents a prevalent malignant kidney tumor characterized by high metastatic potential and recurrence rates. Investigations into the molecular mechanisms and therapeutic targets of ccRCC have provided novel directions for early diagnosis and targeted therapy. The CXCR4 gene plays a pivotal role in tumor progression and metastasis. In this study, this study first conducted differential analysis and WGCNA analysis on the dataset, and performed GO and KEGG analysis on the differentially expressed genes, revealing key biological processes and signaling pathways, particularly in cell adhesion and immune regulation. Based on WGCNA and cross genes of differentially expressed genes, 50 central genes were identified through PPI analysis. LASSO, SVM-RFE, and RF algorithms are used to identify the key gene CXCR4 associated with ccRCC. Survival analysis revealed that high CXCR4 expression correlates with poor patient prognosis. Immune analysis highlighted differences in immune cell distribution across ccRCC subtypes, emphasizing the importance of gene-immune interactions in disease pathogenesis. Finally, validation was conducted in vitro using techniques such as PCR and Western blot. Our findings position CXCR4 as a potential preventive gene, offering new theoretical insights for early diagnosis and targeted treatment of ccRCC.

Indexed as

Carcinoma, Renal CellKidney NeoplasmsMachine LearningReceptors, CXCR4Biomarkers, TumorCell Line, TumorGene Expression ProfilingGene Expression Regulation, NeoplasticGene Regulatory NetworksHumansPrognosisProtein Interaction MapsBiomarkers, TumorCXCR4 protein, humanReceptors, CXCR4BiomarkerClear cell renal cell carcinomaCXCR4Immune analysisMachine learning

Identifiers

PMID40595325
PMCPMC12216948

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.