Evidence map›Paper›PMID 40595013›Full record

ArticleCommunications medicine2025

Modulation of Bifidobacterium by HD5 during weaning is associated with high abundance in later life.

Yu Shimizu, Yuki Yokoi, Shuya Ohira, Hirohisa Izumi, Satomi Kawakami, Miu Ihara, Fuka Tabata, Yasuhiro Takeda, Takashi Kimura, Koshi Nakamura and 3 more

Abstract read
In one paragraph

Article in Communications medicine, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Yu ShimizuInnate Immunity Laboratory, Faculty of Advanced Life Science, Hokkaido University, Hokkaido, Japan.ORCID http://orcid.org/0000-0002-5439-7678
Yuki YokoiInnate Immunity Laboratory, Faculty of Advanced Life Science, Hokkaido University, Hokkaido, Japan.ORCID http://orcid.org/0000-0002-8077-3200
Shuya OhiraInnate Immunity Laboratory, Faculty of Advanced Life Science, Hokkaido University, Hokkaido, Japan.ORCID http://orcid.org/0000-0003-4326-9707
Hirohisa IzumiR&D Division, Morinaga Milk Industry Co., Ltd., Kanagawa, Japan.ORCID http://orcid.org/0000-0002-8855-4774
Satomi KawakamiR&D Division, Morinaga Milk Industry Co., Ltd., Kanagawa, Japan.
Miu IharaGraduate School of Life Science, Hokkaido University, Hokkaido, Japan.
Fuka TabataR&D Division, Morinaga Milk Industry Co., Ltd., Kanagawa, Japan.
Yasuhiro TakedaR&D Division, Morinaga Milk Industry Co., Ltd., Kanagawa, Japan.
Takashi KimuraDepartment of Public Health, Faculty and Graduate School of Medicine, Hokkaido University, Hokkaido, Japan.ORCID http://orcid.org/0000-0002-6839-8962
Koshi NakamuraDepartment of Public Health and Epidemiology, Graduate School of Medicine, University of the Ryukyus, Okinawa, Japan.ORCID http://orcid.org/0000-0001-8141-7614
Akiko TamakoshiDepartment of Public Health, Faculty and Graduate School of Medicine, Hokkaido University, Hokkaido, Japan.
Tokiyoshi AyabeInnate Immunity Laboratory, Faculty of Advanced Life Science, Hokkaido University, Hokkaido, Japan.ORCID http://orcid.org/0000-0002-8631-5593
Kiminori NakamuraInnate Immunity Laboratory, Faculty of Advanced Life Science, Hokkaido University, Hokkaido, Japan. kiminori@sci.hokudai.ac.jp.ORCID http://orcid.org/0000-0002-4123-2137

Funding

MEXT | Japan Science and Technology Agency (JST) JPMJCE 1301MEXT | Japan Science and Technology Agency (JST) JPMJPF2108MEXT | Japan Society for the Promotion of Science (JSPS) 20H04098MEXT | Japan Society for the Promotion of Science (JSPS) 21H02891MEXT | Japan Society for the Promotion of Science (JSPS) 22K19120
6 · The paper itself

Abstract

backgroundBifidobacterium colonization of the intestine is believed to have beneficial effects on our health from infancy throughout life. However, how particular members of the genus Bifidobacterium colonize the neonatal intestine and whether early-life bifidobacterial colonization affects establishment of Bifidobacterium-rich microbiota in later life remain unanswered. α-Defensin secreted from small intestinal Paneth cells elicits selective bactericidal activities that efficiently kill pathogens while hardly affecting commensals including Bifidobacterium in vitro, thus contributing to intestinal microbiota regulation.

methodsOne hundred forty-eight fecal samples were serially obtained from 33 children from postnatal 3-5 days to 3 years old, conducting a longitudinal cohort study of mothers and children living in Iwamizawa city, Hokkaido, Japan (SMILE Iwamizawa study). Microbiota composition and secretory level of α-defensin, human defensin 5 (HD5), were assessed to investigate the relationship between HD5 and Bifidobacterium colonization.

resultsWe show that HD5 is associated with colonization of Bifidobacterium in early life from pre-weaning to weaning periods. Furthermore, high relative abundance of Bifidobacterium in the weaning period, which positively correlates with HD5 secretion, is associated with the establishment of Bifidobacterium-rich microbiota at 3 years old, when the intestinal microbiota matures.

conclusionsThis study suggests the importance of the weaning period in establishing long-lasting homeostasis interwoven with the host innate immunity and Bifidobacterium in the intestinal microbiota.

Identifiers

PMID40595013
PMCPMC12219304

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.