Evidence map›Paper›PMID 40594904›Full record

ArticleScientific reports2025

Comprehensive genomic analysis reveals virulence and antibiotic resistance genes in a multidrug-resistant Bacillus cereus isolated from hospital wastewater in Bangladesh.

Mohammad Sayem, Mahbub Arefin Rafi, Israt Dilruba Mishu, Zimam Mahmud

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Article in Scientific reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

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5citing papers in PubMed
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1 · What the graph read from it

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3 · Its place in the literature

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5 citing papers in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

4 authors.

Mohammad Sayem *Department of Biochemistry and Molecular Biology, University of Dhaka, Dhaka, 1000, Bangladesh.
Mahbub Arefin Rafi *Department of Microbiology, University of Dhaka, Dhaka, 1000, Bangladesh.
Israt Dilruba MishuDepartment of Microbiology, University of Dhaka, Dhaka, 1000, Bangladesh. israt_mishu@du.ac.bd.
Zimam MahmudDepartment of Biochemistry and Molecular Biology, University of Dhaka, Dhaka, 1000, Bangladesh. zimam@du.ac.bd.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Hospital wastewater represents a significant reservoir for antimicrobial-resistant bacteria, including multidrug-resistant (MDR) Bacillus cereus, a pathogen of growing concern due to its potential impact on public health and environmental safety. This study characterizes the genomic features, antimicrobial resistance (AMR) mechanisms, and virulence potential of Bacillus cereus MBC, isolated from hospital wastewater in Dhaka, Bangladesh. Using whole-genome sequencing (WGS) and advanced bioinformatics, we analyzed the isolate's taxonomy, phylogenetics, functional annotation, and biosynthetic potential. The genome, spanning 5.6 Mb with a GC content of 34.84%, contained 5,881 protein-coding sequences, including 1,424 hypothetical proteins, and 28 genes associated with AMR. Phylogenetic analysis revealed a close genetic relationship with Bacillus cereus ATCC 14579, sharing virulence factors such as hemolysin BL (HBL), non-hemolytic enterotoxin (NHE), and cytotoxin K (CytK), all contributing to its pathogenicity. The ability to form biofilms further enhances the strain's persistence and resistance in hospital environments. AMR profiling identified genes conferring resistance to beta-lactams (e.g., BcI, BcII, BcIII), tetracyclines (tetB(P)), glycopeptides (vanY), and fosfomycin, highlighting the bacterium's capacity to resist a wide array of antibiotics. Functional annotation revealed metabolic pathways involved in iron acquisition and the biosynthesis of siderophores such as petrobactin and bacillibactin, reinforcing the bacterium's adaptability in nutrient-limited environments. Mobile genetic elements, including prophages, CRISPR-Cas systems, and transposable elements, suggest significant horizontal gene transfer (HGT), enhancing genetic plasticity and resistance spread. Pangenomic analysis, involving 125 B. cereus strains, revealed a high degree of genetic diversity and close relationships with strains from clinical, food, and agricultural environments, emphasizing the overlap between clinical and environmental reservoirs of resistance. The strain's isolation from hospital wastewater underscores the complex interplay between environmental contaminants and bacterial evolution, which fosters MDR traits. Our findings underscore the urgent need for enhanced genomic surveillance and wastewater management strategies to mitigate the spread of MDR B. cereus and AMR genes in hospital environments.

Indexed as

Bacillus cereusDrug Resistance, Multiple, BacterialWastewaterAnti-Bacterial AgentsBangladeshGenome, BacterialGenomicsHospitalsHumansPhylogenyVirulenceVirulence FactorsWhole Genome SequencingAnti-Bacterial AgentsVirulence FactorsWastewaterAntimicrobial resistance mechanismsBiofilm formationBiosynthetic gene clustersHorizontal gene transferHospital wastewaterMultidrug-resistant Bacillus cereusPangenomicsPublic health riskWhole genome sequencing

Identifiers

PMID40594904
PMCPMC12215725

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