Evidence map›Paper›PMID 40594531›Full record

ArticleScientific reports2025

Identifying ovarian cancer with machine learning DNA methylation pattern analysis.

Jesus Gonzalez Bosquet, Vincent M Wagner, Douglas Russo, Henry D Reyes, Andreea M Newtson, David P Bender, Michael J Goodheart

Abstract read
In one paragraph

Article in Scientific reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Jesus Gonzalez BosquetDepartment of Obstetrics and Gynecology, University of Iowa, 200 Hawkins Dr., Iowa City, IA, 52242, USA. jesus-gonzalezbosquet@uiowa.edu.
Vincent M WagnerDepartment of Obstetrics and Gynecology, University of Iowa, 200 Hawkins Dr., Iowa City, IA, 52242, USA.
Douglas RussoDivision of Urogynecology and Reconstructive Pelvic Surgery, Department of Obstetrics and Gynecology, University of Chicago, Chicago, IL, USA.
Henry D ReyesGPPC Network, Williamsville, NY, 14221, USA.
Andreea M NewtsonEndeavor Health, Evanston, IL, 68198, USA.
David P BenderDepartment of Obstetrics and Gynecology, University of Iowa, 200 Hawkins Dr., Iowa City, IA, 52242, USA.
Michael J GoodheartDepartment of Obstetrics and Gynecology, University of Iowa, 200 Hawkins Dr., Iowa City, IA, 52242, USA.

Funding

Viral VectorP30CA086862 · NCI · UNIVERSITY OF IOWA · PI Christopher K Laubenthal · 2000 to 2026
$70.0M
Targeted Therapy for Endometrial CancerR01CA099908 · NCI · UNIVERSITY OF NEW MEXICO HEALTH SCIS CTR · PI LESLIE, KIMBERLY K. · 2002 to 2023
$5.8M
The Iowa Women's Reproductive Health Research Career Development CenterK12HD063117 · NICHD · UNIVERSITY OF IOWA · PI LESLIE, KIMBERLY K. · 2009 to 2013
$2.3M
American Association of Obstetricians and Gynecologists Foundation (AAOGF) Bridge Funding Award AAOGF-2018NCI NIH HHS P30 CA086862NCI NIH HHS R01 CA099908NICHD NIH HHS K12 HD063117NIH HHS 5R01CA99908-18
6 · The paper itself

Abstract

The majority of patients with epithelial ovarian cancer (EOC) continue to be diagnosed at an advanced stage despite great advances in this disease treatment. To impact overall survival, we need better methods of EOC early diagnosis. We performed a case control study to predict high-grade serous cancer (HGSC) using artificial intelligence methodology and methylated DNA from surgical specimens. Initial prediction models with MethylNet were accurate but complex (AUC = 100%). We optimized these models by selecting the most informative probes with univariate ANOVA analyses first, and then multivariate lasso regression modelling. This step-wise approach resulted in 9 methylated probes predicting HGSC with an AUC of 100%. These models were validated with different analytics and with an independent DNA-methylation experiment with excellent performances.

Indexed as

Carcinoma, Ovarian EpithelialDNA MethylationMachine LearningOvarian NeoplasmsAgedCase-Control StudiesFemaleHumansMiddle Aged

Identifiers

PMID40594531
PMCPMC12218148

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.