Evidence map›Paper›PMID 40593711›Full record

ArticleNature communications2025

Highly ordered clustering of TNFα and BAFF ligand-receptor-intracellular adaptor complexes on a lipid membrane.

Chan Seok Lim, Jisun Lee, Ji Won Kim, Jie-Oh Lee

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Review
  5. Review
  6. Article
  7. Article
  8. TRAF6 coiled-coil domain mediates its trimerization.bioRxiv : the preprint server for biology · 2025
    Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Chan Seok LimDepartment of Life Sciences, POSTECH, Pohang, Gyungbuk, 37673, Korea.ORCID http://orcid.org/0000-0002-0269-7601
Jisun LeeDepartment of Life Sciences, POSTECH, Pohang, Gyungbuk, 37673, Korea.
Ji Won KimInstitute of Membrane Proteins, POSTECH, Pohang, Gyungbuk, 37673, Korea.ORCID http://orcid.org/0000-0002-4098-2198
Jie-Oh LeeDepartment of Life Sciences, POSTECH, Pohang, Gyungbuk, 37673, Korea. jieoh@postech.ac.kr.ORCID http://orcid.org/0000-0001-6519-6049

Funding

National Research Foundation of Korea (NRF) 2023-00260454National Research Foundation of Korea (NRF) 2024-00344154
6 · The paper itself

Abstract

The TNF family plays a critical role in immune regulation. Here, we present high-resolution structures of clusters formed by two TNF receptor family proteins, TNFR1 and BAFFR. Using a lipid monolayer method to mimic their membrane-bound state, we observe that the TNFα-TNFR1 complex forms highly ordered clusters of trimers on the lipid membrane. A non-competitive TNFR1 antagonist that inhibits receptor activation disrupted these clusters without blocking ligand binding or receptor trimerization. Furthermore, we find that the BAFF-BAFFR, BAFF-TACI, and BAFF-BCMA receptor-ligand complexes predominantly form pentagonal clusters of trimers on the lipid membrane. Notably, the binding of the intracellular adaptor TRAF3 to the BAFF-BAFFR complex induces a structural transition from a pentagonal to a flat hexagonal cluster. Mutations in BAFF that impair BAFFR activation prevented cluster formation. Our findings demonstrate that ligand binding induces the formation of highly ordered clusters of TNFR1 and BAFFR receptors on the lipid membrane, which is essential for their activation.

Indexed as

B-Cell Activating FactorB-Cell Activation Factor ReceptorCell MembraneMembrane LipidsReceptors, Tumor Necrosis Factor, Type ITumor Necrosis Factor-alphaHumansLigandsProtein BindingProtein MultimerizationTNF Receptor-Associated Factor 3Transmembrane Activator and CAML Interactor ProteinB-Cell Activating FactorB-Cell Activation Factor ReceptorLigandsMembrane LipidsReceptors, Tumor Necrosis Factor, Type ITNF Receptor-Associated Factor 3TNFRSF13B protein, humanTNFSF13B protein, humanTransmembrane Activator and CAML Interactor ProteinTumor Necrosis Factor-alpha

Identifiers

PMID40593711
PMCPMC12216653

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.