Evidence map›Paper›PMID 40593698›Full record

ArticleNature communications2025

Fast growth and high-titer bioproduction from renewable formate via metal-dependent formate dehydrogenase in Escherichia coli.

Aidan E Cowan, Mason Hillers, Vittorio Rainaldi, Florent Collas, Hemant Choudhary, Basem S Zakaria, Gregory G Bieberach, David N Carruthers, Maxwell Grabovac, Jennifer W Gin and 11 more

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Toward Solar-Powered Growth of AutotrophicJournal of the American Chemical Society · 2026
    Article
  5. FormatotrophicSynthetic and systems biotechnology · 2026
    Article
  6. Article
  7. Electrocatalytic COChemistry (Weinheim an der Bergstrasse, Germany) · 2026
    Article
  8. Review
  9. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors.

Aidan E CowanJoint BioEnergy Institute, Emeryville, CA, USA. aidancowan@berkeley.edu.
Mason HillersJoint BioEnergy Institute, Emeryville, CA, USA.
Vittorio RainaldiLaboratory of Microbiology, Wageningen University and Research, Wageningen, The Netherlands.ORCID http://orcid.org/0000-0003-3921-368X
Florent Collasb.fab GmbH, Cologne, Germany.
Hemant ChoudharyJoint BioEnergy Institute, Emeryville, CA, USA.ORCID http://orcid.org/0000-0003-2847-3080
Basem S ZakariaAdvanced Biofuels and Bioproducts Process Development Unit, Emeryville, CA, USA.
Gregory G Bieberachb.fab GmbH, Cologne, Germany.ORCID http://orcid.org/0000-0003-1588-5246
David N CarruthersJoint BioEnergy Institute, Emeryville, CA, USA.
Maxwell GrabovacJoint BioEnergy Institute, Emeryville, CA, USA.
Jennifer W GinJoint BioEnergy Institute, Emeryville, CA, USA.
Bridgie CawthonJoint BioEnergy Institute, Emeryville, CA, USA.
Yan ChenJoint BioEnergy Institute, Emeryville, CA, USA.
Emine Akyuz TurumtayJoint BioEnergy Institute, Emeryville, CA, USA.
Edward E K BaidooJoint BioEnergy Institute, Emeryville, CA, USA.
Christopher J PetzoldJoint BioEnergy Institute, Emeryville, CA, USA.ORCID http://orcid.org/0000-0002-8270-5228
Adam M FeistJoint BioEnergy Institute, Emeryville, CA, USA.
Sara Tejedor-SanzAdvanced Biofuels and Bioproducts Process Development Unit, Emeryville, CA, USA.
Frank Kensyb.fab GmbH, Cologne, Germany.
Blake A SimmonsJoint BioEnergy Institute, Emeryville, CA, USA.ORCID http://orcid.org/0000-0002-1332-1810
Jay D KeaslingJoint BioEnergy Institute, Emeryville, CA, USA. keasling@berkeley.edu.ORCID http://orcid.org/0000-0003-4170-6088
Nico J ClaassensLaboratory of Microbiology, Wageningen University and Research, Wageningen, The Netherlands. nico.claassens@wur.nl.ORCID http://orcid.org/0000-0003-1593-0377

Funding

Synthetic biology tools for scalable production of medicinal plant terpenesR01AT010593 · NCCIH · STANFORD UNIVERSITY · PI KEASLING, JAY D, LANGE, BERND MARKUS · 2019 to 2023
$3.5M
NCCIH NIH HHS R01 AT010593
6 · The paper itself

Abstract

Microbial bioproduction using one-carbon (C1) feedstocks has the potential to decarbonize the manufacturing of materials, fuels, and chemicals. Formate is a promising C1 feedstock, and the realization of industrial, formatotrophic platform organisms is a key goal for C1-based bioproduction. So far, a major limitation for synthetic formatotrophy has been slow energy supply due to slow formate dehydrogenase activity. Here, we implement a fast, metal-dependent formate dehydrogenase complex in a synthetic formatotrophic Escherichia coli utilizing the reductive glycine pathway. After a short-term evolution, we demonstrate formatotrophic growth of E. coli with a doubling time of less than 4.5 h, comparable to the fastest natural formatotrophs. To further explore the potential of a formate-based bioeconomy, this strain is engineered to produce mevalonate, as well as the terpenoid and aviation fuel precursor isoprenol, using formate we generate directly from the electrochemical reduction of CO

Indexed as

Escherichia coliEscherichia coli ProteinsFormate DehydrogenasesFormatesCarbon DioxideGlycineMetabolic EngineeringCarbon DioxideEscherichia coli ProteinsFormate DehydrogenasesFormatesformic acidGlycine

Identifiers

PMID40593698
PMCPMC12218308

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.