Evidence map›Paper›PMID 40593680›Full record

ArticleNature communications2025

Spatial patterns of hepatocyte glucose flux revealed by stable isotope tracing and multi-scale microscopy.

Aliyah Habashy, Christopher Acree, Keun-Young Kim, Ali Zahraei, Martin Dufresne, Sebastien Phan, Melanie Cutler, Emilee Patterson, Alexandra G Mulligan, Kristopher Burkewitz and 7 more

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Calorie Restriction modulates beta cell IPbioRxiv : the preprint server for biology · 2025
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

17 authors.

Aliyah Habashy *Department of Molecular Physiology and Biophysics, Vanderbilt University, Nashville, TN, USA.
Christopher Acree *Department of Molecular Physiology and Biophysics, Vanderbilt University, Nashville, TN, USA.ORCID http://orcid.org/0000-0002-3958-1055
Keun-Young KimNational Center for Imaging and Microscopy Research (NCMIR) and the Department of Neurosciences, University of California San Diego, School of Medicine, La Jolla, CA, USA.
Ali ZahraeiDepartment of Cell and Developmental Biology, Vanderbilt University, Nashville, TN, USA.
Martin DufresneDepartment of Cell and Developmental Biology, Vanderbilt University, Nashville, TN, USA.
Sebastien PhanNational Center for Imaging and Microscopy Research (NCMIR) and the Department of Neurosciences, University of California San Diego, School of Medicine, La Jolla, CA, USA.
Melanie CutlerDepartment of Molecular Physiology and Biophysics, Vanderbilt University, Nashville, TN, USA.
Emilee PattersonDepartment of Molecular Physiology and Biophysics, Vanderbilt University, Nashville, TN, USA.
Alexandra G MulliganDepartment of Cell and Developmental Biology, Vanderbilt University, Nashville, TN, USA.ORCID http://orcid.org/0000-0003-0793-9865
Kristopher BurkewitzDepartment of Cell and Developmental Biology, Vanderbilt University, Nashville, TN, USA.ORCID http://orcid.org/0000-0001-8531-0566
Charles Robert FlynnDepartment of Surgery, Vanderbilt University Medical Center, Nashville, TN, USA.
Louise LantierDepartment of Molecular Physiology and Biophysics, Vanderbilt University, Nashville, TN, USA.ORCID http://orcid.org/0000-0002-6620-4976
Thomas DeerinckNational Center for Imaging and Microscopy Research (NCMIR) and the Department of Neurosciences, University of California San Diego, School of Medicine, La Jolla, CA, USA.
Owen P McGuinnessDepartment of Molecular Physiology and Biophysics, Vanderbilt University, Nashville, TN, USA.ORCID http://orcid.org/0000-0002-1778-3203
Jeffrey M SpragginsDepartment of Cell and Developmental Biology, Vanderbilt University, Nashville, TN, USA.ORCID http://orcid.org/0000-0001-9198-5498
Mark H EllismanNational Center for Imaging and Microscopy Research (NCMIR) and the Department of Neurosciences, University of California San Diego, School of Medicine, La Jolla, CA, USA.ORCID http://orcid.org/0000-0001-8893-8455
Rafael Arrojo E DrigoDepartment of Molecular Physiology and Biophysics, Vanderbilt University, Nashville, TN, USA. r.drigo@vanderbilt.edu.ORCID http://orcid.org/0000-0001-7712-013X

Funding

Tumor Immunology and Microenvironment Research ProgramP30CA068485 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI STACIE B DUSETZINA · 1995 to 2026
$172.8M
Translational Analysis CoreP30DK058404 · NIDDK · VANDERBILT UNIVERSITY MEDICAL CENTER · PI RICHARD M. PEEK · 2002 to 2026
$29.9M
Vanderbilt Diabetes Research CenterP30DK020593 · NIDDK · VANDERBILT UNIVERSITY MEDICAL CENTER · PI ALVIN C POWERS · 2012 to 2026
$29.3M
NIDDK Network Coordinating UnitU24DK097771 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Shuibing Chen, Jeffrey S. Grethe · 2013 to 2026
$20.9M
Shop Module CoreP30EY008126 · NEI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI David J. Calkins · 1989 to 2026
$19.6M
Vanderbilt Mouse Metabolic Physiology CenterU24DK059637 · NIDDK · VANDERBILT UNIVERSITY · PI WASSERMAN, DAVID H · 2001 to 2015
$14.9M
National Center for Microscopy and Imaging Research: A BRAIN Technology Integration and Dissemination ResourceU24NS120055 · NINDS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI ELLISMAN, MARK H · 2021 to 2025
$5.4M
Acquisition of a Focused Ion Beam Scanning Electron Microscope with cryo-stageS10OD028704 · OD · VANDERBILT UNIVERSITY · PI TYSKA, MATTHEW J · 2022 to 2022
$1.6M
Beta cell adaptation mechanisms during caloric restriction and ER stressR01DK138141 · NIDDK · VANDERBILT UNIVERSITY · PI Rafael Arrojo e Drigo · 2024 to 2026
$1.5M
Interrogation of the cellular and subcellular architecture of nutrient metabolism in conditions of dietary restrictionR56AG082758 · NIA · VANDERBILT UNIVERSITY · PI ARROJO E DRIGO, RAFAEL, BURKEWITZ, KRISTOPHER · 2023 to 2024
$793k
Mapping the association of beta cell longevity and cell senescence in type 1 diabetesR03DK127484 · NIDDK · VANDERBILT UNIVERSITY · PI ARROJO E DRIGO, RAFAEL · 2020 to 2021
$326k
Comprehensive Laboratory Animal Measurement System (CLAMS)S10RR028101 · NCRR · VANDERBILT UNIVERSITY · PI ELLACOTT, KATE LJ · 2010 to 2010
$202k
NCI NIH HHS P30 CA068485NCRR NIH HHS S10 RR028101NEI NIH HHS P30 EY008126NIA NIH HHS R56 AG082758NIDDK NIH HHS P30 DK020593NIDDK NIH HHS P30 DK058404NIDDK NIH HHS R01 DK138141NIDDK NIH HHS R03 DK127484NIDDK NIH HHS U24 DK059637NIDDK NIH HHS U24 DK097771NIH HHS S10 OD028704NINDS NIH HHS U24 NS120055
6 · The paper itself

Abstract

Metabolic homeostasis requires engagement of catabolic and anabolic pathways consuming nutrients that generate and consume energy and biomass. Our current understanding of cell homeostasis and metabolism, including how cells utilize nutrients, comes largely from tissue and cell models analyzed after fractionation, and that fail to reveal the spatial characteristics of cell metabolism, and how these aspects relate to the location of cells and organelles within tissue microenvironments. Here we show the application of multi-scale microscopy, machine learning-based image segmentation, and spatial analysis tools to quantitatively map the fate of nutrient-derived

Indexed as

GlucoseHepatocytesMicroscopyAnimalsCarbon IsotopesEndoplasmic ReticulumGlycogenHumansLipid DropletsMaleMiceMitochondriaCarbon IsotopesGlucoseGlycogen

Identifiers

PMID40593680
PMCPMC12219532

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.