Evidence map›Paper›PMID 40593539›Full record

ArticleNature communications2025

A genome-wide association study in 10,000 individuals links plasma N-glycome to liver disease and anti-inflammatory proteins.

Sodbo Sharapov, Anna Timoshchuk, Olga Zaytseva, Denis E Maslov, Anna Soplenkova, Elizaveta E Elgaeva, Evgeny S Tiys, Massimo Mangino, Clemens Wittenbecher, Lennart Karssen and 21 more

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Review
  2. Proteogenomics in human populations.Nature reviews. Genetics · 2026
    Review
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

31 authors.

Sodbo SharapovMSU Institute for Artificial Intelligence, Lomonosov Moscow State University, Moscow, Russia.ORCID http://orcid.org/0000-0003-0279-4900
Anna TimoshchukMSU Institute for Artificial Intelligence, Lomonosov Moscow State University, Moscow, Russia.ORCID http://orcid.org/0000-0001-8529-4498
Olga ZaytsevaGenos Glycoscience Research Laboratory, Borongajska cesta 83H, Zagreb, Croatia.
Denis E MaslovMSU Institute for Artificial Intelligence, Lomonosov Moscow State University, Moscow, Russia.ORCID http://orcid.org/0000-0003-2806-5933
Anna SoplenkovaMSU Institute for Artificial Intelligence, Lomonosov Moscow State University, Moscow, Russia.ORCID http://orcid.org/0000-0003-0703-146X
Elizaveta E ElgaevaInstitute of Cytology and Genetics, Novosibirsk, Russia.ORCID http://orcid.org/0000-0002-2484-553X
Evgeny S TiysInstitute of Cytology and Genetics, Novosibirsk, Russia.
Massimo ManginoDepartment of Twin Research and Genetic Epidemiology, School of Life Course Sciences, King's College London, St Thomas' Campus, Lambeth Palace Road, London, United Kingdom.ORCID http://orcid.org/0000-0002-2167-7470
Clemens WittenbecherDepartment of Molecular Epidemiology, German Institute of Human Nutrition Potsdam-Rehbruecke, Nuthetal, Germany.
Lennart KarssenPolyOmica, 's-Hertogenbosch, Hertogenbosch, PA, The Netherlands.ORCID http://orcid.org/0000-0002-1959-342X
Maria TimofeevaColon Cancer Genetics Group, Cancer Research UK Scotland Centre, Institute of Genetics & Cancer, Western General Hospital, The University of Edinburgh, Edinburgh, United Kingdom.
Arina NostaevaInstitute of Cytology and Genetics, Novosibirsk, Russia.
Frano VuckovicGenos Glycoscience Research Laboratory, Borongajska cesta 83H, Zagreb, Croatia.ORCID http://orcid.org/0000-0002-4845-0882
Irena Trbojević-AkmačićGenos Glycoscience Research Laboratory, Borongajska cesta 83H, Zagreb, Croatia.ORCID http://orcid.org/0000-0003-0106-0155
Tamara ŠtambukGenos Glycoscience Research Laboratory, Borongajska cesta 83H, Zagreb, Croatia.
Sofya FeoktistovaInstitute of Cytology and Genetics, Novosibirsk, Russia.
Nadezhda A PotapovaEngelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow, Russia.
Viktoria VoroshilovaInstitute of Cytology and Genetics, Novosibirsk, Russia.
Frances WilliamsDepartment of Twin Research and Genetic Epidemiology, School of Life Course Sciences, King's College London, St Thomas' Campus, Lambeth Palace Road, London, United Kingdom.ORCID http://orcid.org/0000-0002-2998-2744
Dragan PrimoracSt. Catherine Specialty Hospital, Ulica Kneza Branimira, 71E, Zagreb, Croatia.ORCID http://orcid.org/0000-0001-5565-080X
Jan Van ZundertDepartment of Anesthesiology and Multidisciplinary Paincentre, ZOL, Genk, Lanaken, Belgium.ORCID http://orcid.org/0000-0002-5389-2036
Michel GeorgesUnit of Animal Genomics, WELBIO, GIGA-R and Faculty of Veterinary Medicine, University of Liège, (B34) 1 Avenue de l'Hôpital, Liège, Belgium.
Karsten SuhreDepartment of Physiology and Biophysics, Weill Cornell Medicine-Qatar, Education City, Doha, Qatar.ORCID http://orcid.org/0000-0001-9638-3912
Massimo AllegriCentre Lemanique d'antalgie et neuromodulation - EHC, Morges, Switzerland.ORCID http://orcid.org/0000-0002-8201-980X
Nishi ChaturvediMRC Unit for Lifelong Health & Ageing University College London, London, United Kingdom.ORCID http://orcid.org/0000-0002-6211-2775
Malcolm DunlopColon Cancer Genetics Group, Cancer Research UK Scotland Centre, Institute of Genetics & Cancer, Western General Hospital, The University of Edinburgh, Edinburgh, United Kingdom.ORCID http://orcid.org/0000-0002-3033-5851
Matthias B SchulzeDepartment of Molecular Epidemiology, German Institute of Human Nutrition Potsdam- Rehbruecke, 14558, Nuthetal, Germany.ORCID http://orcid.org/0000-0002-0830-5277
Tim SpectorDepartment of Twin Research and Genetic Epidemiology, School of Life Course Sciences, King's College London, St Thomas' Campus, Lambeth Palace Road, London, United Kingdom.ORCID http://orcid.org/0000-0002-9795-0365
Yakov A TsepilovInstitute of Cytology and Genetics, Novosibirsk, Russia.ORCID http://orcid.org/0000-0002-4931-6052
Gordan LaucGenos Glycoscience Research Laboratory, Borongajska cesta 83H, Zagreb, Croatia.ORCID http://orcid.org/0000-0003-1840-9560
Yurii S AulchenkoMSU Institute for Artificial Intelligence, Lomonosov Moscow State University, Moscow, Russia. yurii@bionet.nsc.ru.ORCID http://orcid.org/0000-0002-7899-1575

Funding

Wellcome Trust
6 · The paper itself

Abstract

More than a half of plasma proteins are N-glycosylated. Most of them are synthesized, glycosylated, and secreted to the bloodstream by liver and lymphoid tissues. While associations with N-glycosylation are implicated in the rising number of liver, cardiometabolic, and immune diseases, little is known about the genetic regulation of this process. Here, we performed the largest genome-wide association study of N-glycosylation of the blood plasma proteome in 10,000 individuals. We doubled the number of genetic loci known to be associated with blood N-glycosylation by identifying 16 novel loci and prioritizing 13 novel genes contributing to N-glycosylation. Among these were the GCKR, TRIB1, HP, SERPINA1 and CFH genes. These genes are predominantly expressed in the liver and show a previously unknown genetic link between plasma protein N-glycosylation, metabolic and liver diseases, and inflammatory response. By integrating glycomics, proteomics, transcriptomics, and genomics, we provide a resource that facilitates deeper exploration of disease pathogenesis and supports the discovery of glycan-based biomarkers.

Indexed as

Blood ProteinsLiver Diseasesalpha 1-AntitrypsinBiomarkersFemaleGenome-Wide Association StudyGlycomicsGlycosylationHaptoglobinsHumansIntracellular Signaling Peptides and ProteinsLiverMalePolymorphism, Single NucleotidePolysaccharidesProteomealpha 1-AntitrypsinBiomarkersBlood ProteinsHaptoglobinsHP protein, humanIntracellular Signaling Peptides and ProteinsPolysaccharidesProteomeSERPINA1 protein, human

Identifiers

PMID40593539
PMCPMC12218978

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.