Evidence map›Paper›PMID 40593482›Full record

ArticleNature communications2025

Thio-NHS esters are non-innocent protein acylating reagents.

Weibing Liu, Aziz Khan, Yana Demyanenko, Shabaz Mohammed, Benjamin G Davis

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Weibing Liu *The Rosalind Franklin Institute, Harwell Oxfordshire, UK.ORCID http://orcid.org/0000-0001-8161-4562
Aziz Khan *The Rosalind Franklin Institute, Harwell Oxfordshire, UK.
Yana Demyanenko *The Rosalind Franklin Institute, Harwell Oxfordshire, UK.ORCID http://orcid.org/0000-0002-6628-1912
Shabaz MohammedThe Rosalind Franklin Institute, Harwell Oxfordshire, UK. Shabaz.Mohammed@rfi.ac.uk.ORCID http://orcid.org/0000-0003-2640-9560
Benjamin G DavisThe Rosalind Franklin Institute, Harwell Oxfordshire, UK. Ben.Davis@rfi.ac.uk.ORCID http://orcid.org/0000-0002-5056-407X

Funding

RCUK | Engineering and Physical Sciences Research Council (EPSRC) EP/V011 359/1, EP/T012 021/1, EP/X527 245/1
6 · The paper itself

Abstract

N-Hydroxysuccinimide (NHS)-ester derivatives are widely used reagents in biological chemistry and chemical biology. Their efficacy relies critically on the exclusive chemoselectivity of activated acyl over that of the imidic acyl moieties in the succinimide. Here, through systematic structural variation that modulates acyl reactivity, coupled with a statistically controlled ultra-rapid screen for unknown modifications in tandem mass spectra as well as lysine profiling across complex lysine environments, including those within proteomes containing many thousands of proteins, we reveal that ring-opening to afford N-succinamide derivatives is a present, sometimes dominant, side-reaction. The extent of side-reaction is shown to be site-dependent, with side-reaction and desired reaction occurring within the same protein substrate. The resulting formation of bioconjugates with unintended, unstable linkages and modifications suggests the re-evaluation of: (i) known commercial reagents; and (ii) functional conclusions previously drawn using NHS esters in areas as diverse as antibody-drug biotherapy, vaccination and cross-link-enabled structural analyses.

Indexed as

EstersProteinsSuccinimidesAcylationHumansIndicators and ReagentsLysineTandem Mass SpectrometryEstersIndicators and ReagentsLysineN-hydroxysuccinimideProteinsSuccinimides

Identifiers

PMID40593482
PMCPMC12217259

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.