Evidence map›Paper›PMID 40593175›Full record

ArticleScientific reports2025

High-resolution structure of the heat-stable form-IAq RuBisCO from the thermophilic purple sulfur bacterium Thermochromatium tepidum.

Shenghai Chang, Weiwei Wang, Michael T Madigan, Long-Jiang Yu, Haichun Gao, Zheng-Yu Wang-Otomo, Xing Zhang, Jing-Hua Chen

Abstract read
In one paragraph

Article in Scientific reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Shenghai Chang *Department of Biophysics, Department of Pathology of Sir Run Run Shaw Hospital, Zhejiang University School of Medicine, Hangzhou, 310058, Zhejiang, China.
Weiwei Wang *College of Life Sciences, Zhejiang University, Hangzhou, 310058, China.
Michael T MadiganSchool of Biological Sciences, Department of Microbiology, Southern Illinois University, Carbondale, IL, 62901, USA.
Long-Jiang YuPhotosynthesis Research Center, Key Laboratory of Photobiology, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China.
Haichun GaoCollege of Life Sciences, Zhejiang University, Hangzhou, 310058, China.
Zheng-Yu Wang-OtomoFaculty of Science, Ibaraki University, Mito, Japan. seiu.otomo.sci@vc.ibaraki.ac.jp.
Xing ZhangDepartment of Biophysics, Department of Pathology of Sir Run Run Shaw Hospital, Zhejiang University School of Medicine, Hangzhou, 310058, Zhejiang, China. xzhang1999@zju.edu.cn.
Jing-Hua ChenCollege of Life Sciences, Zhejiang University, Hangzhou, 310058, China. jhchentop@163.com.

Funding

NASA Cooperative Agreement 80NSSC21M0355National Natural Science Foundation of China 32100202Natural Science Foundation of Zhejiang Province, China LR22C010001
6 · The paper itself

Abstract

Ribulose 1,5-bisphosphate carboxylase/oxygenase (RuBisCO) catalyzes the initial carbon fixation reaction in the Calvin-Benson-Bassham cycle. Among the many forms of RuBisCOs, form-I-a protein complex containing 8 large and 8 small subunits-is the most common, representing over 90% of all known RuBisCOs. Although many form-I RuBisCO structures have been determined, no structure has been reported for a form-IAq RuBisCO. Here, we detail the structure of the heat-stable form-IAq RuBisCO from the thermophilic and anaerobic purple bacterium Thermochromatium (Tch.) tepidum at 1.55 Å resolution. The overall structure of the Tch. tepidum form-IAq RuBisCO resembles both a form-IAc RuBisCO from a chemolithotrophic sulfur bacterium and a synthetic form-I RuBisCO reconstructed from ancestral sequences. However, the Tch. tepidum enzyme shows significantly greater interactions between adjacent small subunits through their extended N-terminal domains that contain a characteristic six-residue insertion unique to form-IAq RuBisCOs. Structural differences of Tch. tepidum RuBisCO from its mesophilic relative Allochromatium vinosum, and key substitutions on the hydrophilic surface of the small subunits suggests the mechanisms of its enhanced thermostability. Our structure represents the first structure of a form-IAq RuBisCO, providing fresh clues for unraveling the evolutionary history of RuBisCO and new details for how this key enzyme remains active at elevated temperatures.

Indexed as

Bacterial ProteinsChromatiaceaeRibulose-Bisphosphate CarboxylaseCrystallography, X-RayEnzyme StabilityHot TemperatureModels, MolecularProtein ConformationBacterial ProteinsRibulose-Bisphosphate CarboxylaseCryo-EMPhotosynthesisRuBisCOThermochromatium tepidum

Identifiers

PMID40593175
PMCPMC12216891

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.