Evidence map›Paper›PMID 40592898›Full record

ArticleNature communications2025

NAD-dependent dehydrogenases enable efficient growth of Paracoccus denitrificans on the PET monomer ethylene glycol.

Minrui Ren, Danni Li, Holly Addison, Willem E M Noteborn, Elisabeth H Andeweg, Timo Glatter, Johannes H de Winde, Johannes G Rebelein, Meindert H Lamers, Lennart Schada von Borzyskowski

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. EngineeringApplied and environmental microbiology · 2026
    Article
  3. Article
  4. Review
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Minrui RenInstitute of Biology Leiden, Leiden University, Leiden, The Netherlands.
Danni LiInstitute of Biology Leiden, Leiden University, Leiden, The Netherlands.ORCID http://orcid.org/0009-0006-9900-9241
Holly AddisonMax Planck Institute for Terrestrial Microbiology, Marburg, Germany.ORCID http://orcid.org/0009-0002-2541-0746
Willem E M NotebornNetherlands Center for Electron Nanoscopy, Leiden University, Leiden, The Netherlands.ORCID http://orcid.org/0000-0003-1211-6222
Elisabeth H AndewegDepartment of Cell and Chemical Biology, Leiden University Medical Center, Leiden, The Netherlands.
Timo GlatterFacility for Mass Spectrometry and Proteomics, Max Planck Institute for Terrestrial Microbiology, Marburg, Germany.ORCID http://orcid.org/0000-0001-8716-8516
Johannes H de WindeInstitute of Biology Leiden, Leiden University, Leiden, The Netherlands.ORCID http://orcid.org/0000-0002-7999-9317
Johannes G RebeleinMax Planck Institute for Terrestrial Microbiology, Marburg, Germany.ORCID http://orcid.org/0000-0003-2560-716X
Meindert H LamersDepartment of Cell and Chemical Biology, Leiden University Medical Center, Leiden, The Netherlands.ORCID http://orcid.org/0000-0002-4205-1338
Lennart Schada von BorzyskowskiInstitute of Biology Leiden, Leiden University, Leiden, The Netherlands. L.Schada.von.Borzyskowski@biology.leidenuniv.nl.ORCID http://orcid.org/0000-0003-2952-4572

Funding

Bontius Stichting (Bontius Foundation) BS182CSC | Chinese Government Scholarship CSC202207720003Deutsche Forschungsgemeinschaft (German Research Foundation) 446841743Nederlandse Organisatie voor Wetenschappelijk Onderzoek (Netherlands Organisation for Scientific Research) 184.034.014
6 · The paper itself

Abstract

Ethylene glycol is a monomer of the plastic polyethylene terephthalate (PET) and an environmental pollutant of increasing concern. Although it is generally accepted that bacteria use ethylene glycol as growth substrate, not all involved enzymes are well understood. Here, we show that Paracoccus denitrificans assimilates ethylene glycol solely via NAD-dependent alcohol and aldehyde dehydrogenases. Using comparative proteomics, we identify a gene cluster that is strongly expressed in the presence of ethylene glycol. We report the functional and structural characterization of EtgB and EtgA, key enzymes encoded by this etg gene cluster. We furthermore show that the transcriptional activator EtgR controls expression of the gene cluster. Adaptive laboratory evolution on ethylene glycol results in faster growth, enabled by increased production of EtgB and EtgA. Bioinformatic analysis reveals that the etg gene cluster is widely distributed among bacteria, suggesting a common role of NAD-dependent dehydrogenases in microbial ethylene glycol assimilation.

Indexed as

Bacterial ProteinsEthylene GlycolParacoccus denitrificansPolyethylene GlycolsGene Expression Regulation, BacterialMultigene FamilyNADProteomicsBacterial ProteinsEthylene GlycolNADPolyethylene Glycols

Identifiers

PMID40592898
PMCPMC12214560

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.