Evidence map›Paper›PMID 40591085›Full record

ArticleDiscover oncology2025

Single nucleotide polymorphism and expression of P16 gene as a potential biomarker for oral and pre-oral cancer.

Kumud Nigam, Yogendra Verma, Manish Raj Kulshrestha, Aditi Singh, Somali Sanyal

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Article in Discover oncology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

5 authors.

Kumud NigamAmity Institute of Biotechnology, Amity University Uttar Pradesh, Gomti Nagar Ext. Lucknow, Lucknow, 226028, India.
Yogendra VermaDepartment of Oral Pathology, King George's Medical University, Lucknow, India.
Manish Raj KulshresthaDepartment of Biochemistry, DR. Ram Manohar Lohia Institute of Medical Sciences, Lucknow, India.
Aditi SinghAmity Institute of Biotechnology, Amity University Uttar Pradesh, Gomti Nagar Ext. Lucknow, Lucknow, 226028, India.
Somali SanyalAmity Institute of Biotechnology, Amity University Uttar Pradesh, Gomti Nagar Ext. Lucknow, Lucknow, 226028, India. ssanyal@lko.amity.edu.ORCID https://orcid.org/0000-0003-0983-934X

Funding

Indian Council of Medical Research 3/2/2/54-2018 NCD-III
6 · The paper itself

Abstract

objectiveThis study investigated the association between p16 gene and its 450 C > G (rs11515) polymorphism with risk of oral cancer and precancerous oral lesions/oral potentially malignant disorder (OPMD).

methodThe study included 230 individuals with OPMD conditions (70 with leukoplakia, 90 with oral submucous fibrosis, and 70 with lichen planus), 72 oral cancer patients, and 300 cancer-free healthy controls. Genotyping of the p16 450 C > G polymorphism was conducted using PCR-RFLP methods, and genotype and allele frequencies were analyzed using chi-square test. Additionally, p16 gene expression levels were measured using RT-PCR among oral cancer patients, those with OPMD, and healthy controls. RNA fold was used to calculate the MFE of p16 mRNA.

resultsThe findings revealed that G allele of p16 450 C > G polymorphism significantly increased risk of oral diseases (oral cancer and OPMD) compared to C allele (OR 1.67, p = 0.0001). GG genotype was associated with higher risk of oral submucous fibrosis (OR 4.63, p = 0.0001), lichenplanus (OR 3.93, p = 0.0002), and leukoplakia (OR 2.38, p = 0.02) compared to CC genotype. Smokers and tobacco chewers carrying the G allele were at a significantly increased risk of developing OPMD (OR = 3.78 and 2.89). Notably, p16 transcript expression was significantly elevated (13.56-fold) in oral cancer patients compared to healthy controls. According to insilco analysis G allele gives more stable transcript of p16 (MEF - 64.90 kcal/mol) compared to C allele (MFE - 61.70 kcal/mol).

conclusionThese findings suggest that p16 gene and its 450 C > G polymorphism may be associated with risk of oral diseases, indicating their potential utility as biomarkers for these conditions.

Indexed as

OPMDOral cancerP16Polymorphism

Identifiers

PMID40591085
PMCPMC12214103

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