Evidence map›Paper›PMID 40590974›Full record

ArticlePlanta2025

Genome-wide analysis of miRNAs and their target genes in wheat cultivars with different ploidy levels under drought stress.

Ferhat Ulu, Necdet Mehmet Unel, Mehmet Cengiz Baloglu

Abstract read
In one paragraph

Article in Planta, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Ferhat UluPlantomics Research Laboratory, Department of Genetics and Bioengineering, Faculty of Engineering and Architecture, Kastamonu University, Kastamonu, Turkey.ORCID http://orcid.org/0000-0002-9407-9084
Necdet Mehmet UnelPlantomics Research Laboratory, Department of Genetics and Bioengineering, Faculty of Engineering and Architecture, Kastamonu University, Kastamonu, Turkey.ORCID http://orcid.org/0000-0002-7522-9278
Mehmet Cengiz BalogluPlantomics Research Laboratory, Department of Genetics and Bioengineering, Faculty of Engineering and Architecture, Kastamonu University, Kastamonu, Turkey. mcbaloglu@kastamonu.edu.tr.ORCID http://orcid.org/0000-0003-2976-7224

Funding

TUBITAK 215Z354
6 · The paper itself

Abstract

MAIN

conclusionThis study provides novel insight into the role of miRNAs in the drought resistance of different wheat cultivars, revealing a correlation between ploidy level and drought tolerance. MicroRNAs (miRNAs) are endogenous, mostly conserved, non-coding regulatory RNAs with 20-24 nt in length. Although many studies have been conducted on miRNAs that play a role in wheat drought stress response, there are no comparative studies in wheat cultivars with different ploidy levels. Here we compared miRNAs profiles of three wheat cultivars with different chromosome numbers and drought resistance levels using miRNAome and qRT-PCR analysis. Bioinformatics analysis showed that all cultivars shared 93 miRNAs in the control leaf, while 91 miRNAs were shared in stress-treated leaf groups. A total of 90 and 92 miRNAs were expressed by all cultivars in control and stress root samples, respectively. Also, 17 and 21 miRNAs were expressed species-specifically in control and stress leaf, whereas 23 and 20 were expressed in control and stress root groups, respectively. Also, tae-miR159a and tae-miR167c expressions showed drought resistance increases as the ploidy level rises, and Triticum aestivum and Triticum turgidum are more tolerant than Triticum monococcum. Furthermore, according to in silico analysis 729 and 771 genes were targeted in control-leaf and stress-leaf groups of all cultivars; also, 775 and 776 genes were targeted in control-root and stress-root samples by determined miRNAs, respectively. Additionally, degradome data showed 351 and 356 genes were targeted in leaf and root tissues, respectively. These findings propose that genotypic variation is responsible for the differential expression of miRNAs and the target genes in drought stress response. The results could serve as a guide for future research on the drought response mechanism.

Indexed as

DroughtsMicroRNAsPloidiesTriticumGene Expression Regulation, PlantGenome, PlantPlant LeavesPlant RootsRNA, PlantStress, PhysiologicalMicroRNAsRNA, PlantAridityBread wheatDurum wheatEinkorn wheatMicro-RNAMirnomePloidyStress responseTarget genesTriticum aestivumTriticum monococcumTriticum turgidum

Identifiers

PMID40590974
PMCPMC12213836

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.