Evidence map›Paper›PMID 40590916›Full record

ArticleBasic research in cardiology2025

A macrophage gene-regulatory network linked to clinical severity of coronary artery disease : The STARNET and NGS-PREDICT primary blood macrophage studies.

Lijiang Ma, Jacqueline E Tamis-Holland, Giuseppe Mocci, Kathryn Wolhuter, Nicole S Bryce, Swathy Sajja, Letizia Amadori, Payal Pradhan, Peik Sean Chong, Katyayani Sukhavasi and 13 more

Abstract read
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In one paragraph

Article in Basic research in cardiology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors.

Lijiang Ma *Cardiovascular Research Institute, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Jacqueline E Tamis-Holland *Cleveland Clinic, Heart Vascular and Thoracic Institute, Cleveland, OH, USA.
Giuseppe MocciDepartment of Medicine, Karolinska Institutet, Karolinska Universitetssjukhuset, Huddinge, Sweden.
Kathryn WolhuterVictor Chang Cardiac Research Institute, Darlinghurst, Australia.
Nicole S BryceVictor Chang Cardiac Research Institute, Darlinghurst, Australia.
Swathy SajjaDepartment of Genetics and Genomic Sciences Icahn Institute for Genomics and Multiscale Biology, Icahn School of Medicine at Mount Sinai, One Gustave L. Levy Place, Box 1498, New York, NY, 10029-6574, USA.
Letizia AmadoriDepartment of Genetics and Genomic Sciences Icahn Institute for Genomics and Multiscale Biology, Icahn School of Medicine at Mount Sinai, One Gustave L. Levy Place, Box 1498, New York, NY, 10029-6574, USA.
Payal PradhanDepartment of Genetics and Genomic Sciences Icahn Institute for Genomics and Multiscale Biology, Icahn School of Medicine at Mount Sinai, One Gustave L. Levy Place, Box 1498, New York, NY, 10029-6574, USA.
Peik Sean ChongDepartment of Genetics and Genomic Sciences Icahn Institute for Genomics and Multiscale Biology, Icahn School of Medicine at Mount Sinai, One Gustave L. Levy Place, Box 1498, New York, NY, 10029-6574, USA.
Katyayani SukhavasiDepartment of Cardiac Surgery, Heart Clinic, Tartu University Hospital, Tartu, Estonia.
Haoxiang ChengDepartment of Genetics and Genomic Sciences Icahn Institute for Genomics and Multiscale Biology, Icahn School of Medicine at Mount Sinai, One Gustave L. Levy Place, Box 1498, New York, NY, 10029-6574, USA.
Ling LiGerman Heart Centre Munich, Department of Cardiology, Technical University Munich, 80636, Munich, Germany.
Shichao PangGerman Heart Centre Munich, Department of Cardiology, Technical University Munich, 80636, Munich, Germany.
Eric E SchadtDepartment of Genetics and Genomic Sciences Icahn Institute for Genomics and Multiscale Biology, Icahn School of Medicine at Mount Sinai, One Gustave L. Levy Place, Box 1498, New York, NY, 10029-6574, USA.
Heribert SchunkertGerman Heart Centre Munich, Department of Cardiology, Technical University Munich, 80636, Munich, Germany.
Moritz von ScheidtGerman Heart Centre Munich, Department of Cardiology, Technical University Munich, 80636, Munich, Germany.
Arno RuusaleppDepartment of Cardiac Surgery, Heart Clinic, Tartu University Hospital, Tartu, Estonia.
Pedro R MorenoCardiovascular Institute, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Ke HaoDepartment of Genetics and Genomic Sciences Icahn Institute for Genomics and Multiscale Biology, Icahn School of Medicine at Mount Sinai, One Gustave L. Levy Place, Box 1498, New York, NY, 10029-6574, USA.
Chiara GiannarelliCardiovascular Research Institute, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Clint L MillerDepartment of Genome Sciences, University of Virginia, Charlottesville, VA, USA.
Jason C Kovacic *Cardiovascular Research Institute, Icahn School of Medicine at Mount Sinai, New York, NY, USA. J.Kovacic@victorchang.edu.au.ORCID 0000-0003-4555-769X
Johan L M Björkegren *Department of Genetics and Genomic Sciences Icahn Institute for Genomics and Multiscale Biology, Icahn School of Medicine at Mount Sinai, One Gustave L. Levy Place, Box 1498, New York, NY, 10029-6574, USA.

Funding

Multimodal genetic regulatory architecture of coronary artery diseaseR01HL148239 · NHLBI · UNIVERSITY OF VIRGINIA · PI Clint L Miller · 2019 to 2026
$4.2M
Dissecting the role of CD8+ T cells in atherosclerosisR01HL153712 · NHLBI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI GIANNARELLI, CHIARA · 2020 to 2024
$3.3M
Mechanisms of atherosclerotic cardiovascular complications in COVID19R01HL165258 · NHLBI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI GIANNARELLI, CHIARA · 2022 to 2025
$3.1M
Integrative genomic and functional genomic studies to connect variant to function for CAD GWAS lociR01HL168174 · NHLBI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Wei Li, EDOARDO MARCORA · 2023 to 2026
$3.1M
Molecular Drivers of Atherosclerosis in DiabetesU01DK142283 · NIDDK · UNIVERSITY OF VIRGINIA · PI Mete Civelek, Clint L Miller · 2024 to 2026
$2.9M
Understanding the Molecular Mechanisms of Fibromuscular DysplasiaR01HL148167 · NHLBI · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI KADIAN-DODOV, DANIELLA, KOVACIC, JASON CIRIL · 2020 to 2023
$2.8M
Systems Genetics of Vascular Smooth Muscle PhenotypesR01HL166428 · NHLBI · UNIVERSITY OF VIRGINIA · PI Mete Civelek · 2023 to 2026
$2.4M
Functional genomics investigation of pleiotropic vascular disease lociR01HL164577 · NHLBI · UNIVERSITY OF VIRGINIA · PI MILLER, CLINT L · 2022 to 2025
$2.3M
NHLBI NIH HHS R01 HL148239NHLBI NIH HHS R01 HL164577NHLBI NIH HHS R01 HL165258NIDDK NIH HHS U01 DK142283NIH HHS R01HL148167NIH HHS R01HL148239NIH HHS R01HL153712NIH HHS R01HL164577NIH HHS R01HL165258NIH HHS R01HL166428NIH HHS R01HL168174
6 · The paper itself

Abstract

Coronary artery disease (CAD) is a major cause of global morbidity and mortality. Macrophages play a central role in orchestrating this disease process. In 2016, we initiated the STARNET primary blood macrophage study, followed by the multi-ethnic NGS-PREDICT primary blood macrophage study in 2018. We applied integrative systems genetics analysis to explore and validate the role of macrophage gene regulatory co-expression networks (GRNs) in clinically significant CAD. This study included 318 CAD cases and 134 CAD-free controls in STARNET, and 95 CAD cases and 35 CAD-free controls in NGS-PREDICT. Primary leukocytes were isolated from blood and differentiated into macrophages in vitro, followed by RNA extraction and deep sequencing (RNAseq). In STARNET, we analyzed differentially expressed genes, inferred macrophage GRNs, assessed the phenotypic associations and functions of these GRNs, and determined their key driver genes. Integrative analysis of STARNET expression quantitative traits (eQTLs) with genotype data from genome-wide association studies was performed to determine the content of CAD candidate genes in these GRNs, and their contributions to CAD heritability. Five independent RNAseq datasets were used to retrospectively validate CAD-associated macrophage GRNs, followed by prospective validation in the NGS-PREDICT study. Using the STARNET datasets, we identified 23 macrophage GRNs. Of these, GRN

Indexed as

Coronary Artery DiseaseGene Regulatory NetworksMacrophagesAgedCase-Control StudiesFemaleGenetic Predisposition to DiseaseGenome-Wide Association StudyHigh-Throughput Nucleotide SequencingHumansMaleMiddle AgedPhenotypeRetrospective StudiesSeverity of Illness IndexAtherosclerosisCoronary artery diseaseMacrophageMitochondria

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.