Evidence map›Paper›PMID 40588680›Full record

ArticleNature neuroscience2025

Human CLOCK enhances neocortical function.

Yuxiang Liu, Miles R Fontenot, Ashwinikumar Kulkarni, Nitin Khandelwal, Seon Hye E Voth Park, Connor Criswell, Matthew Harper, Pin Xu, Nisha Gupta, Jay R Gibson and 2 more

Abstract read
In one paragraph

Article in Nature neuroscience, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Yuxiang LiuDepartment of Neuroscience, UT Southwestern Medical Center, Dallas, TX, USA.
Miles R FontenotDepartment of Neuroscience, UT Southwestern Medical Center, Dallas, TX, USA.
Ashwinikumar KulkarniDepartment of Neuroscience, UT Southwestern Medical Center, Dallas, TX, USA.
Nitin KhandelwalDepartment of Neuroscience, UT Southwestern Medical Center, Dallas, TX, USA.ORCID http://orcid.org/0000-0001-7229-4413
Seon Hye E Voth ParkDepartment of Neuroscience, UT Southwestern Medical Center, Dallas, TX, USA.
Connor CriswellDepartment of Neuroscience, UT Southwestern Medical Center, Dallas, TX, USA.ORCID http://orcid.org/0000-0002-1115-8802
Matthew HarperDepartment of Neuroscience, UT Southwestern Medical Center, Dallas, TX, USA.
Pin XuDepartment of Neuroscience, UT Southwestern Medical Center, Dallas, TX, USA.
Nisha GuptaDepartment of Neuroscience, UT Southwestern Medical Center, Dallas, TX, USA.
Jay R GibsonDepartment of Neuroscience, UT Southwestern Medical Center, Dallas, TX, USA.
Joseph S TakahashiDepartment of Neuroscience, UT Southwestern Medical Center, Dallas, TX, USA. joseph.takahashi@utsouthwestern.edu.ORCID http://orcid.org/0000-0003-0384-8878
Genevieve KonopkaDepartment of Neuroscience, UT Southwestern Medical Center, Dallas, TX, USA. genevieve.konopka@utsouthwestern.edu.ORCID http://orcid.org/0000-0002-3363-7302

Funding

Comparative Epigenomics of Primate BrainsR01HG011641 · NHGRI · UNIVERSITY OF CALIFORNIA SANTA BARBARA · PI KONOPKA, GENEVIEVE, SHERWOOD, CHESTER · 2021 to 2024
$2.4M
American Heart Association (American Heart Association, Inc.) 915654American Heart Association-American Stroke Association 915654James S. McDonnell Foundation (McDonnell Foundation) 22002046NHGRI NIH HHS R01 HG011641U.S. Department of Health & Human Services | National Institutes of Health (NIH) MH103517U.S. Department of Health & Human Services | National Institutes of Health (NIH) MH105158
6 · The paper itself

Abstract

The transcription factor CLOCK is ubiquitously expressed and important for circadian rhythms, while its human-specific expression in neocortex suggests additional functions. Here, we generated a mouse model (HU) that recapitulates human cortical expression of CLOCK. The HU mice show enhanced cognitive flexibility, which might be associated with alteration in spatiotemporal expression of CLOCK. Cell-type-specific genomic profiling identified upregulated genes related to dendritic growth and spine formation in excitatory neurons of HU mice. We also found that excitatory neurons in HU mice have increased dendritic complexity and spine density, and a greater frequency of excitatory postsynaptic currents, suggesting a greater abundance of neural connectivity. In contrast, CLOCK knockout in human induced pluripotent stem cell-derived neurons showed reduced complexity of dendrites and lower density of presynaptic puncta. Together, our data demonstrate that CLOCK might have evolved brain-relevant gains of function via altered spatiotemporal gene expression and that these functions may underlie human brain specializations.

Indexed as

CLOCK ProteinsNeocortexNeuronsAnimalsCircadian RhythmDendritesExcitatory Postsynaptic PotentialsHumansMaleMiceMice, KnockoutMice, TransgenicCLOCK protein, humanCLOCK Proteins

Identifiers

PMID40588680
PMCPMC13123639

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.