Evidence map›Paper›PMID 40588496›Full record

Articlenpj antimicrobials and resistance2025

Risk of multidrug resistance in Escherichia coli associated with routine antimicrobial prophylaxis on pig farms.

Ryohei Toya, Miki Okuno, Yosuke Sasaki, Keisuke Yoshihara, Yuichiro Deguchi, Debora Satie Nagano, Seiji Shimada, Yoshitoshi Ogura

Abstract read
In one paragraph

Article in npj antimicrobials and resistance, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Role of C17 fengycin B fromApplied and environmental microbiology · 2026
    Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Ryohei ToyaProduction Veterinary Medical Center, Miyazaki Prefecture Agricultural Mutual Aid Association, Miyazaki, Japan.
Miki OkunoDepartment of Infectious Medicine, Kurume University School of Medicine, Fukuoka, Japan.
Yosuke SasakiDepartment of Agriculture, School of Agriculture, Meiji University, Kawasaki, Japan.
Keisuke YoshiharaProduction Veterinary Medical Center, Miyazaki Prefecture Agricultural Mutual Aid Association, Miyazaki, Japan.
Yuichiro DeguchiProduction Veterinary Medical Center, Miyazaki Prefecture Agricultural Mutual Aid Association, Miyazaki, Japan.
Debora Satie NaganoDepartment of Infectious Medicine, Kurume University School of Medicine, Fukuoka, Japan.
Seiji ShimadaProduction Veterinary Medical Center, Miyazaki Prefecture Agricultural Mutual Aid Association, Miyazaki, Japan.
Yoshitoshi OguraDepartment of Infectious Medicine, Kurume University School of Medicine, Fukuoka, Japan. y_ogura@kurume-u.ac.jp.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Although extensively studied, the association between antimicrobial usage and the emergence of antimicrobial resistance (AMR) in livestock still has unresolved aspects. This study analyzed the genomes of 195 Escherichia coli strains from pigs, a species with high antimicrobial consumption, across five production stages on 13 farms in Japan employing diverse antimicrobial administration strategies. A total of 61 acquired AMR genes (aARGs), spanning 13 distinct antimicrobial classes, were identified. A significant correlation was found between antimicrobial usage and the number of aARGs in E. coli strains. The four farms with the highest usage administered antimicrobials orally as routine prophylaxis during fattening. These farms showed significantly higher proportions of multidrug-resistant (MDR) genotypes at all stages compared to farms without routine prophylaxis. The number of frequently detected aARGs was more strongly correlated with total antimicrobial usage than with the usage of the corresponding antimicrobial classes. Co-occurrence network analysis suggested that genetic linkages among these aARGs may promote co-selection, thereby acting as a driving force in the emergence of MDR strains under routine prophylaxis treatment.

Identifiers

PMID40588496
PMCPMC12209429

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.