Evidence map›Paper›PMID 40586263›Full record

ArticlemBio2025

Codevelopment of gut microbial metabolism and visual neural circuitry over human infancy.

Kevin S Bonham, Emma T Margolis, Guilherme Fahur Bottino, Ana C Sobrino, Fadheela Patel, Shelley McCann, Michal R Zieff, Marlie Miles, Donna Herr, Lauren Davel and 13 more

Abstract read
In one paragraph

Article in mBio, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors.

Kevin S Bonham *Department of Biological Sciences, Wellesley College, Wellesley, Massachusetts, USA.ORCID 0000-0003-3200-7533
Emma T Margolis *Department of Psychology, Northeastern University, Boston, Massachusetts, USA.ORCID 0000-0002-2036-8078
Guilherme Fahur BottinoDepartment of Biological Sciences, Wellesley College, Wellesley, Massachusetts, USA.ORCID 0000-0003-1953-1576
Ana C SobrinoDepartment of Psychology, Northeastern University, Boston, Massachusetts, USA.ORCID 0009-0000-4857-2591
Fadheela PatelDivision of Medical Microbiology, University of Cape Town, Cape Town, Western Cape, South Africa.ORCID 0000-0001-5177-7416
Shelley McCannDepartment of Biological Sciences, Wellesley College, Wellesley, Massachusetts, USA.ORCID 0000-0002-9753-7968
Michal R ZieffDepartment of Paediatrics and Child Health, University of Cape Town, Cape Town, Western Cape, South Africa.
Marlie MilesDepartment of Paediatrics and Child Health, University of Cape Town, Cape Town, Western Cape, South Africa.
Donna HerrDepartment of Paediatrics and Child Health, University of Cape Town, Cape Town, Western Cape, South Africa.
Lauren DavelDepartment of Paediatrics and Child Health, University of Cape Town, Cape Town, Western Cape, South Africa.
Cara BoscoDepartment of Psychology, Northeastern University, Boston, Massachusetts, USA.
Khula South African Data Collection TeamDepartment of Paediatrics and Child Health, University of Cape Town, Cape Town, Western Cape, South Africa.
Curtis HuttenhowerDepartment of Biostatistics, Harvard T. H. Chan School of Public Health, Boston, Massachusetts, USA.ORCID 0000-0002-1110-0096
Nicolò PiniDepartment of Psychiatry, Columbia University, Irving Medical Center, , New York, New York, USA.ORCID 0000-0002-0839-6033
Daniel C AlexanderDepartment of Computer Science, Centre for Medical Image Computing, University College London, London, England, United Kingdom.ORCID 0000-0003-2439-350X
Derek K JonesCardiff University Brain Research Imaging Centre, Cardiff University, Cardiff, United Kingdom.ORCID 0000-0003-4409-8049
Steve C R WilliamsDepartment of Neuroimaging, King's College London, London, England, United Kingdom.ORCID 0000-0003-4299-1941
Dima AmsoDepartment of Psychology, Columbia University, New York, New York, USA.ORCID 0000-0001-6798-4698
Melissa GladstoneDepartment of Women and Children's Health, Institute of Life Course and Medical Science, Alder Hey Children's NHS Foundation Trust University of Liverpool, Liverpool, England, United Kingdom.ORCID 0000-0002-2579-9301
William P FiferDepartment of Psychiatry, Columbia University, Irving Medical Center, , New York, New York, USA.ORCID 0000-0002-6936-9303
Kirsten A DonaldDepartment of Paediatrics and Child Health, University of Cape Town, Cape Town, Western Cape, South Africa.ORCID 0000-0002-0276-9660
Laurel J Gabard-Durnam *Department of Psychology, Northeastern University, Boston, Massachusetts, USA.ORCID 0000-0002-4564-8068
Vanja Klepac-Ceraj *Department of Biological Sciences, Wellesley College, Wellesley, Massachusetts, USA.ORCID 0000-0001-5387-5706

Funding

Characterizing a Translational Mechanism of Sensitive Period Neuroplasticity and Cognitive Sequalae in Human Infant Visual DevelopmentF31HD118804 · NICHD · NORTHEASTERN UNIVERSITY · PI MARGOLIS, EMMA TAYLOR · 2025 to 2025
$50k
NICHD NIH HHS F31 HD118804Wellcome Trust
6 · The paper itself

Abstract

Infancy is a time of elevated neuroplasticity supporting rapid brain and sensory development. The gut microbiome, also undergoing extensive developmental changes in early life, may influence brain development through the metabolism of neuroactive compounds. Here, we leverage longitudinal data from 194 South African infants across the first 18 months of life to show that microbial genes encoding enzymes that metabolize molecules playing a key role in modulating early neuroplasticity are associated with visual cortical neurodevelopment, measured by the Visual-Evoked Potential (VEP). Neuroactive compounds included neurotransmitters GABA and glutamate, the amino acid tryptophan, and short-chain fatty acids involved in myelination, including acetate and butyrate. Microbial gene sets around 4 months of age were strongly associated with the VEP from around 9-14 months of age and showed more associations than concurrently measured gene sets, suggesting that microbial metabolism in early life may affect subsequent neural plasticity and development.IMPORTANCEOver the past decade, extensive research has revealed strong links between the gut microbiome and the brain, at least in adults or those with neuropsychiatric disorders. This study explores how these associations emerge in early development using a longitudinal sample of 194 infants with repeated microbiome metabolism and electroencephalography (EEG) measures during the critical early period of visual cortex neuroplasticity. We examined microbial genes encoding enzymes for neuroactive compounds (e.g., GABA, glutamate, tryptophan, and short-chain fatty acids) and their association with the visual-evoked potential (VEP). Genes from 4-month stool samples strongly correlated with VEP features between 9 and 14 months, suggesting that early microbial metabolism influences later visual neurodevelopment. These prospective associations were more numerous than the concurrent ones. Our findings suggest that early gut microbiome metabolic potential plays a crucial role in shaping neural plasticity and visual neurodevelopment.

Indexed as

Gastrointestinal MicrobiomeVisual CortexBrainElectroencephalographyEvoked Potentials, VisualFemaleHumansInfantLongitudinal StudiesMaleNeuronal Plasticityinfant gut microbiomemetagenomeneuroplasticityvisual cortex developmentvisual-evoked potential

Identifiers

PMID40586263
PMCPMC12345167

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.