Evidence map›Paper›PMID 40586102›Full record

ArticleComputational and structural biotechnology journal2025

SurvSig: Harnessing gene expression signatures to uncover heterogeneity in lung neuroendocrine neoplasms.

Kolos Nemes, Gabriella Mihalekné Fűr, Alexandra Benő, Christopher W Schultz, Petronella Topolcsányi, Éva Magó, Parth Desai, Nobuyuki Takahashi, Mirit I Aladjem, William Reinhold and 3 more

Abstract read
In one paragraph

Article in Computational and structural biotechnology journal, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Lamin A/C loss promotes R-loop-mediated genomic instability and poor survival in small-cell lung cancer.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Kolos NemesHCEMM Cancer Genomics and Epigenetics Core Group, Szeged, Hungary.
Gabriella Mihalekné FűrHCEMM Cancer Genomics and Epigenetics Core Group, Szeged, Hungary.
Alexandra BenőHCEMM Cancer Genomics and Epigenetics Core Group, Szeged, Hungary.
Christopher W SchultzDevelopmental Therapeutics Branch, Center for Cancer Research, National Cancer Institute, NIH, Bethesda, MD 20892, USA.
Petronella TopolcsányiHCEMM Cancer Genomics and Epigenetics Core Group, Szeged, Hungary.
Éva MagóHCEMM Cancer Genomics and Epigenetics Core Group, Szeged, Hungary.
Parth DesaiDevelopmental Therapeutics Branch, Center for Cancer Research, National Cancer Institute, NIH, Bethesda, MD 20892, USA.
Nobuyuki TakahashiDevelopmental Therapeutics Branch, Center for Cancer Research, National Cancer Institute, NIH, Bethesda, MD 20892, USA.
Mirit I AladjemDevelopmental Therapeutics Branch, Center for Cancer Research, National Cancer Institute, NIH, Bethesda, MD 20892, USA.
William ReinholdDevelopmental Therapeutics Branch, Center for Cancer Research, National Cancer Institute, NIH, Bethesda, MD 20892, USA.
Yves PommierDevelopmental Therapeutics Branch, Center for Cancer Research, National Cancer Institute, NIH, Bethesda, MD 20892, USA.
Anish ThomasDevelopmental Therapeutics Branch, Center for Cancer Research, National Cancer Institute, NIH, Bethesda, MD 20892, USA.
Lorinc S PongorHCEMM Cancer Genomics and Epigenetics Core Group, Szeged, Hungary.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The advances in the field of cancer genomics have enabled researchers and clinicians to identify altered pathways and regulatory networks that differentiate subtypes manifesting as differential phenotypes of lung neuroendocrine neoplasms (NENs). The clinical heterogeneity observed among lung NEN subtypes reflects underlying biological distinctions, including differential mutation patterns, epigenetic changes and immune microenvironment activities. Although in many cases only a handful of underlying genes are used to differentiate patients, broader gene signatures might result in finer separation and help identify patients with differential survival. Lung NENs are vastly underrepresented in pan-cancer studies, resulting in lacking options to explore datasets. To this end, we developed a freely available website (https://survsig.hcemm.eu/) which allows users to upload potential genes of interest, perform patient clustering, compare survival and explore gene expression signature of lung NENs. Leveraging these biological differences enhances the accuracy of gene expression-based prognostic classifiers like SurvSig.

Indexed as

ClusteringExpression signatureLung neuroendocrineMachine learningStratificationSurvival

Identifiers

PMID40586102
PMCPMC12205313

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.