Evidence map›Paper›PMID 40585217›Full record

ArticleResearch square2025

Highly replicating hepatitis C virus variants emerge in immunosuppressed patients causing severe disease.

Volker Lohmann, Paul Rothhaar, Christian Heuss, Margaret Tulessin, Zhiqing Wang, Ha Gyu-Thomas Seong, Colin Förster, Jocelyn Quistrebert, Haiting Chai, Marvin Reineke and 18 more

Abstract readPreprint
In one paragraph

Article in Research square, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

28 authors.

Volker LohmannHeidelberg University.ORCID 0000-0001-8719-7608
Paul RothhaarHeidelberg University.
Christian HeussHeidelberg University.
Margaret TulessinTechnical University of Munich.
Zhiqing WangUniversity of Oxford.
Ha Gyu-Thomas SeongHeidelberg University.
Colin FörsterHeidelberg University.ORCID 0000-0002-4891-7104
Jocelyn QuistrebertUniversity of Oxford.ORCID 0000-0002-4973-3235
Haiting ChaiUniversity of Oxford.
Marvin ReinekeUniversity Hospital Heidelberg.
Louise BenningUniversity Hospital Heidelberg.
Jonathan HoneggerThe Ohio State University School of Medicine.ORCID 0000-0002-3181-0554
Maike HofmannUniversity Hospital Freiburg.ORCID 0000-0001-8410-8833
Robert ThimmeDepartment of Medicine II, University Hospital Freiburg, Freiburg, Germany.; Faculty of Medicine, University of Freiburg, Freiburg, Germany.ORCID 0000-0003-1417-4135
Jörg TimmHeinrich-Heine-University, University Hospital Düsseldorf.ORCID 0000-0001-7799-3045
Graham CookeImperial College London.ORCID 0000-0001-6475-5056
Paul SchnitzlerDept. of Virology, University of Heidelberg.
Uta MerleDepartment of Internal Medicine IV, University Hospital Heidelberg, Heidelberg, Germany.ORCID 0000-0003-1386-3350
Naglaa H ShoukryCentre de Recherche du Centre hospitalier de l'Université de Montréal (CRCHUM).ORCID 0000-0002-8817-8238
Julie BruneauCentre de Recherche du CHUM.
Chaturaka RodrigoUniversity of New South Wales.ORCID 0000-0003-2189-9177
Andrew LloydKirby Institute, University of New South Wales.ORCID 0000-0001-6277-8887
Rowena BullUNSW Sydney.ORCID 0000-0002-9844-3744
Azim AnsariUniversity of Oxford.
Carolin MoglerInstitute of Pathology, TUM.ORCID 0000-0003-3400-7254
John McLauchlanUniversity of Glasgow.
Xavier FornsUniversity of Barcelona.
Sofía Pérez-Del-PulgarUniversity of Barcelona.

Funding

Protective immunity to HCV and rational vaccine designU19AI159819 · NIAID · EMORY UNIVERSITY · PI Arash Grakoui · 2021 to 2026
$16.6M
Persistent hepatitis C virus replication and T cell immunity in pregnancyR01AI096882 · NIAID · RESEARCH INST NATIONWIDE CHILDREN'S HOSP · PI WALKER, CHRISTOPHER M. · 2012 to 2022
$5.7M
NIAID NIH HHS R01 AI096882NIAID NIH HHS U19 AI159819
6 · The paper itself

Abstract

Hepatitis C virus (HCV) exists as a heterogenous quasispecies, but the phenotypic consequences of viral variability are widely unexplored. Here we identified a replication enhancing domain (ReED) in nonstructural protein 5A conferring high replication fitness to clinical isolates. Accumulation of mutations in the ReED mediates high genome replication capacity. In a cohort of liver transplant patients, high replicator variants were exclusively found in individuals with severe disease outcome, suggesting that high viral replication fitness is associated with increased viral pathogenesis. Analysis of large sequence cohorts revealed that overall only 10% of viral genomes showed genetic signatures of high replicators, which were enriched in recipients of liver transplantations, patients developing hepatocellular carcinoma and in HIV coinfected individuals. Overall, our data suggests that low replication fitness is a hallmark of HCV, contributing to establishment of persistence, whereas high replicators appear to have an advantage under conditions of immune suppression, thereby enforcing pathogenesis.

Identifiers

PMID40585217
PMCPMC12204461

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.