Evidence map›Paper›PMID 40584962›Full record

ArticleFrontiers in cell and developmental biology2025

Decoding stimulus-specific regulation of promoter activity of p53 target genes.

Flavia Vigliotti, Nicolai Engelmann, Mark Sinzger-D'Angelo, Heinz Koeppl, Alexander Loewer

Abstract read
In one paragraph

Article in Frontiers in cell and developmental biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Flavia VigliottiSystems Biology of the Stress Response, Department of Biology, Technical University Darmstadt, Darmstadt, Germany.
Nicolai EngelmannSelf-organizing Systems, Department of Electrical Engineering and Information Technology, Technical University Darmstadt, Darmstadt, Germany.
Mark Sinzger-D'AngeloSelf-organizing Systems, Department of Electrical Engineering and Information Technology, Technical University Darmstadt, Darmstadt, Germany.
Heinz KoepplSelf-organizing Systems, Department of Electrical Engineering and Information Technology, Technical University Darmstadt, Darmstadt, Germany.
Alexander LoewerSystems Biology of the Stress Response, Department of Biology, Technical University Darmstadt, Darmstadt, Germany.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The tumor suppressor p53 plays a crucial role in maintaining genome integrity in response to exogenous or endogenous stresses. The dynamics of p53 activation are stimulus- and cell type-dependent and regulate cell fate. Acting as a transcription factor, p53 induces the expression of target genes involved in apoptosis, cell cycle arrest and DNA repair. However, transcription is not a deterministic process, but rather occurs in bursts of activity and promoters switch stochastically between ON and OFF states, resulting in substantial cell-to-cell variability. Here, we characterized how stimulus-dependent p53 dynamics are converted into specific gene regulation patterns by inducing diverse forms of DNA damage ranging from ionizing and UV radiation to clinically relevant chemotherapeutics. We employed single molecule fluorescence

Indexed as

bayesian inferencep53 signallingsmFISHstochastic transcriptiontelegraph model

Identifiers

PMID40584962
PMCPMC12202600

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.