Evidence map›Paper›PMID 40583060›Full record

ArticleExperimental & molecular medicine2025

Chromatin-focused genetic and chemical screens identify BRPF1 as a targetable vulnerability in Taxol-resistant triple-negative breast cancer.

Ozlem Yedier-Bayram, Ahmet Cingöz, Ebru Yilmaz, Ali Cenk Aksu, Beril Esin, Nareg Degirmenci, Ayse Derya Cavga, Beyza Dedeoğlu, Buse Cevatemre, Hamzah Syed and 7 more

Abstract read
In one paragraph

Article in Experimental & molecular medicine, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Ozlem Yedier-BayramKoç University Research Center for Translational Medicine, Istanbul, Turkey.
Ahmet CingözKoç University Research Center for Translational Medicine, Istanbul, Turkey.ORCID http://orcid.org/0000-0002-1111-7752
Ebru YilmazKoç University Research Center for Translational Medicine, Istanbul, Turkey.ORCID http://orcid.org/0000-0003-1033-1797
Ali Cenk AksuKoç University Research Center for Translational Medicine, Istanbul, Turkey.
Beril EsinKoç University Research Center for Translational Medicine, Istanbul, Turkey.
Nareg DegirmenciKoç University Research Center for Translational Medicine, Istanbul, Turkey.
Ayse Derya CavgaKoç University Research Center for Translational Medicine, Istanbul, Turkey.
Beyza DedeoğluKoç University Research Center for Translational Medicine, Istanbul, Turkey.
Buse CevatemreKoç University Research Center for Translational Medicine, Istanbul, Turkey.ORCID http://orcid.org/0000-0002-0437-6385
Hamzah SyedKoç University Research Center for Translational Medicine, Istanbul, Turkey.ORCID http://orcid.org/0000-0001-6981-6962
Martin PhilpottBotnar Research Centre, Nuffield Department of Orthopedics, Rheumatology and Musculoskeletal Sciences, National Institute of Health Research Oxford Biomedical Research Unit, University of Oxford, Oxford, UK.
Adam P CribbsBotnar Research Centre, Nuffield Department of Orthopedics, Rheumatology and Musculoskeletal Sciences, National Institute of Health Research Oxford Biomedical Research Unit, University of Oxford, Oxford, UK.ORCID http://orcid.org/0000-0001-5288-3077
Udo OppermannBotnar Research Centre, Nuffield Department of Orthopedics, Rheumatology and Musculoskeletal Sciences, National Institute of Health Research Oxford Biomedical Research Unit, University of Oxford, Oxford, UK.
Nathan A LackKoç University Research Center for Translational Medicine, Istanbul, Turkey.
Ceyda AcilanKoç University Research Center for Translational Medicine, Istanbul, Turkey.ORCID http://orcid.org/0000-0002-8936-3267
Tamer T OnderKoç University Research Center for Translational Medicine, Istanbul, Turkey.ORCID http://orcid.org/0000-0002-2372-9158
Tugba Bagci-OnderKoç University Research Center for Translational Medicine, Istanbul, Turkey. tuonder@ku.edu.tr.ORCID http://orcid.org/0000-0003-3646-2613

Funding

Türkiye Bilimsel ve Teknolojik Araştirma Kurumu (Scientific and Technological Research Council of Turkey) 221S419
6 · The paper itself

Abstract

Triple-negative breast cancer (TNBC) is a particularly aggressive and frequently recurring form of breast cancer, where chemotherapy is the primary treatment approach. Unfortunately, the development of resistance to chemotherapy poses a considerable challenge, restricting the already limited therapeutic alternatives for recurrent cases. Here, we generated two Taxol-resistant TNBC cell lines with a dose-escalation method to mimic chemotherapy resistance in vitro. These cells exhibited reduced growth rates, altered morphology and evasion of apoptosis. Transcriptome analysis uncovered elevated ABCB1 expression and multidrug-resistant phenotype in these resistant cells. To comprehensively investigate the key epigenetic regulators of Taxol resistance, we conducted chromatin-focused genetic and chemical screens and pinpointed Bromodomain and PHD Finger Containing 1 (BRPF1) as a novel regulator of Taxol resistance. Knockout of BRPF1, the reader protein in the MOZ-MORF histone acetyltransferase complex, but not the other complex members, sensitized resistant cells to Taxol. In addition, BRPF1 inhibitors, PFI-4 and OF-1, in combination with Taxol significantly reduced cell viability. Transcriptome analysis upon BRPF1 loss or inhibition revealed a negative impact on ribosome biogenesis-related gene sets, resulting in a global decrease in protein translation in Taxol-resistant cells. CUT&RUN-qPCR analysis demonstrated that BRPF1 directly binds to the ABCB1 promoter, enhancing its expression toward inducing a multidrug-resistant phenotype. Conversely, knockout or inhibition of BRPF1 leads to decreased ABCB1 expression. Our findings uncover a comprehensive molecular framework, highlighting the pivotal role of epigenetic reader protein BRPF1 in Taxol resistance and providing potential avenues for therapeutic intervention in TNBC.

Indexed as

ChromatinDrug Resistance, NeoplasmNuclear ProteinsPaclitaxelTriple Negative Breast NeoplasmsAntineoplastic Agents, PhytogenicATP Binding Cassette Transporter, Subfamily BCell Line, TumorEpigenesis, GeneticFemaleGene Expression Regulation, NeoplasticHumansAntineoplastic Agents, PhytogenicATP Binding Cassette Transporter, Subfamily BChromatinNuclear ProteinsPaclitaxel

Identifiers

PMID40583060
PMCPMC12229664

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.