Evidence map›Paper›PMID 40581663›Full record

ArticleActa neuropathologica communications2025

Identifying and exploiting combinatorial synthetic lethality by characterizing adaptive kinome rewiring of EGFRvIII-driven glioblastoma.

Benjamin Lin, Abigail K Shelton, Erin Smithberger, Julia Ziebro, Kasey R Skinner, Ryan E Bash, Richard Kirkman, Allie Stamper, Madison Butler, Alex Flores and 15 more

Abstract read
In one paragraph

Article in Acta neuropathologica communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

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3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors.

Benjamin Lin *Medical Scientist Training Program, Heersink School of Medicine, University of Alabama at Birmingham, Birmingham, AL, USA.
Abigail K Shelton *Division of Neuropathology, Department of Pathology, Heersink School of Medicine, University of Alabama at Birmingham, WTI 410C, 1824 6th Avenue South, Birmingham, AL, 35294-3300, USA.
Erin SmithbergerDivision of Neuropathology, Department of Pathology, Heersink School of Medicine, University of Alabama at Birmingham, WTI 410C, 1824 6th Avenue South, Birmingham, AL, 35294-3300, USA.
Julia ZiebroDivision of Neuropathology, Department of Pathology, Heersink School of Medicine, University of Alabama at Birmingham, WTI 410C, 1824 6th Avenue South, Birmingham, AL, 35294-3300, USA.
Kasey R SkinnerDivision of Neuropathology, Department of Pathology, Heersink School of Medicine, University of Alabama at Birmingham, WTI 410C, 1824 6th Avenue South, Birmingham, AL, 35294-3300, USA.
Ryan E BashDivision of Neuropathology, Department of Pathology, Heersink School of Medicine, University of Alabama at Birmingham, WTI 410C, 1824 6th Avenue South, Birmingham, AL, 35294-3300, USA.
Richard KirkmanDivision of Neuropathology, Department of Pathology, Heersink School of Medicine, University of Alabama at Birmingham, WTI 410C, 1824 6th Avenue South, Birmingham, AL, 35294-3300, USA.
Allie StamperDivision of Neuropathology, Department of Pathology, Heersink School of Medicine, University of Alabama at Birmingham, WTI 410C, 1824 6th Avenue South, Birmingham, AL, 35294-3300, USA.
Madison ButlerDepartment of Biology, University of North Carolina, Chapel Hill, NC, USA.
Alex FloresUniversity of North Carolina School of Medicine, Chapel Hill, NC, USA.
Steven P AngusDepartment of Pediatrics, Indiana University School of Medicine, Indianapolis, IN, USA.
Michael P EastDepartment of Pharmacology, University of North Carolina School of Medicine, Chapel Hill, NC, USA.
Timothy F CloughesyDepartment of Neurology, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA.
David A NathansonDepartment of Molecular and Medical Pharmacology, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA.
Michael E BerensCancer and Cell Biology Division, Translational Genomics Research Institute, Phoenix, AZ, USA.
Jann N SarkariaDepartment of Radiation Oncology, Mayo Clinic, Rochester, MN, USA.
Zev A BinderDepartment of Neurosurgery and Glioblastoma Translational Center of Excellence, Abramson Cancer Center, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Donald M O'RourkeDepartment of Neurosurgery and Glioblastoma Translational Center of Excellence, Abramson Cancer Center, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Timothy C HowtonDepartment of Cell, Developmental and Integrative Biology, Heersink School of Medicine, University of Alabama at Birmingham, Birmingham, AL, USA.
Brittany N LasseigneDepartment of Cell, Developmental and Integrative Biology, Heersink School of Medicine, University of Alabama at Birmingham, Birmingham, AL, USA.
Christopher D WilleyO'Neal Comprehensive Cancer Center, Heersink School of Medicine, University of Alabama at Birmingham, Birmingham, AL, USA.
Gary L JohnsonDepartment of Pharmacology, University of North Carolina School of Medicine, Chapel Hill, NC, USA.
Anita B HjelmelandDepartment of Cell, Developmental and Integrative Biology, Heersink School of Medicine, University of Alabama at Birmingham, Birmingham, AL, USA.
Frank B FurnariDepartment of Medicine, Division of Regenerative Medicine, University of California, San Diego, San Diego, CA, USA.
C Ryan MillerDivision of Neuropathology, Department of Pathology, Heersink School of Medicine, University of Alabama at Birmingham, WTI 410C, 1824 6th Avenue South, Birmingham, AL, 35294-3300, USA. ryanmiller@uabmc.edu.

Funding

XRAY CRYSTALLOGRAPHYP30CA013148 · NCI · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI Robert S Welner · 1985 to 2026
$165.9M
UCLA SPORE in Brain CancerP50CA211015 · NCI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI Yvonne Yu-Hsuan Chen · 2017 to 2026
$25.2M
MEDICAL SCIENTIST TRAINING PROGRAMT32GM008361 · NIGMS · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI YACOUBIAN, TALENE ALENE · 1992 to 2024
$16.8M
Statistical atlases of brain tumor MRI:do imaging phenotypes predict progression?R01NS042645 · NINDS · UNIVERSITY OF PENNSYLVANIA · PI DAVATZIKOS, CHRISTOS · 2002 to 2024
$8.7M
Therapy Evaluation CoreU19CA264362 · NCI · MAYO CLINIC ROCHESTER · PI PARNEY, IAN F · 2021 to 2025
$7.6M
Genotypic Interactions in Brain Cancer HeterogeneityR01NS080939 · NINDS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI FURNARI, FRANK · 2012 to 2022
$3.5M
Role of decorin and diffusion MRI in anti-VEGF efficacy for recurrent glioblastomaR01CA270027 · NCI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI TIMOTHY CLOUGHESY, Benjamin M. Ellingson · 2022 to 2026
$3.0M
Credentialing next-generation human glioma models for precision therapeuticsR01CA258248 · NCI · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI Frank Furnari, Christopher Ryan Miller · 2022 to 2026
$3.0M
Pre-Clinical Novel Radiosensitizer Evaluation Program for Brain TumorsU01CA227954 · NCI · MAYO CLINIC ROCHESTER · PI SARKARIA, JANN N. · 2018 to 2022
$3.0M
Mammalian models for integrated metabolic and molecular profiling of malignant gliomaR01CA227089 · NCI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI GRAEBER, THOMAS G, NATHANSON, DAVID A. · 2018 to 2022
$2.7M
Targeting metabolic vulnerabilities in glioblastomaR01CA213133 · NCI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI NATHANSON, DAVID A. · 2017 to 2021
$2.5M
CDKN2A couples lipid metabolism to ferroptosis in glioblastomaR01NS121319 · NINDS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI BENSINGER, STEVEN J, DIXON, SCOTT · 2021 to 2025
$2.5M
NCI NIH HHS F31 CA247177NCI NIH HHS F31CA247177NCI NIH HHS P30 CA013148NCI NIH HHS P50 CA211015NCI NIH HHS R01 CA204136NCI NIH HHS R01CA204136NCI NIH HHS R01 CA213133NCI NIH HHS R01 CA227089NCI NIH HHS R01CA227089NCI NIH HHS R01 CA258248NCI NIH HHS R01CA258248NCI NIH HHS R01 CA270027NCI NIH HHS R01 CA288145NCI NIH HHS R37 CA285434NCI NIH HHS R37CA285434NCI NIH HHS U01 CA227954NCI NIH HHS U01CA227954NCI NIH HHS U19 CA264362NIGMS NIH HHS T32 GM008361NIGMS NIH HHS T32GM008361NINDS NIH HHS R01 NS042645NINDS NIH HHS R01NS042645NINDS NIH HHS R01 NS080939NINDS NIH HHS R01NS080939NINDS NIH HHS R01 NS121319NINDS NIH HHS R01NS121319NINDS NIH HHS R01 NS127424NINDS NIH HHS R01NS127424NINDS NIH HHS R01 NS134798NINDS NIH HHS R01NS134798NINDS NIH HHS R56 NS080939
6 · The paper itself

Abstract

GBM is an aggressive primary malignant brain tumor that has a poor prognosis. Molecular characterization of GBM has shown that EGFR mutations are present in over 50% of tumors. However, EGFR inhibitors have not shown clinical efficacy in contrast to other EGFR-driven neoplasms due to the unique EGFR biology found in GBM. Upfront combinatorial therapy featuring EGFR tyrosine kinase inhibitors (TKI) may overcome these challenges. To identify combinatorial drug targets within the kinome, we temporally characterized drug-induced kinome rewiring in isogenic, genetically engineered Cdkn2a-deleted mouse astrocytes expressing human EGFRvIII. We utilize RNA sequencing and multiplex inhibitor beads, coupled with mass spectrometry, to demonstrate that kinome rewiring exhibits both shared and unique kinases after acquired resistance develops to EGFR TKI, despite using models with a common genetic background. Additionally, we noted that kinases altered in the acute setting are distinct from those in acquired resistance. By identifying kinome vulnerabilities throughout the acute, dynamic drug response process, we generated a kinase signature associated with EGFR inhibition. Further molecular interrogation of signature genes revealed that drug treatment induces an unexpected increase in Cdk6 protein, but not mRNA, despite live cell imaging and transcriptomic evidence indicating decreased proliferation. Survival experiments with orthotopic allografts show that upfront combination inhibition of Cdk6, using abemaciclib, and EGFR, using neratinib, significantly prolonged median survival compared to neratinib alone. Our findings suggest that identifying and inhibiting targets with synthetic lethality in the upfront combinatorial setting is a viable approach for precision oncology and may help provide an avenue to overcome the resistance mechanisms that contributed to the failures of EGFR as a molecular target in GBM.

Indexed as

Brain NeoplasmsErbB ReceptorsGlioblastomaProtein Kinase InhibitorsSynthetic Lethal MutationsAnimalsAntineoplastic AgentsCell Line, TumorDrug Resistance, NeoplasmHumansMiceMice, TransgenicAntineoplastic Agentsepidermal growth factor receptor VIIIErbB ReceptorsProtein Kinase InhibitorsEGFRGlioblastomaKin­ome rewiringSynthetic lethalityUpfront combinatorial therapy

Identifiers

PMID40581663
PMCPMC12205505

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.