Evidence map›Paper›PMID 40581623›Full record

ArticleThe Plant cell2025

A root-specific NLR network mediates immune signaling of resistance genes against plant parasitic nematodes.

Daniel Lüdke, Toshiyuki Sakai, Jiorgos Kourelis, AmirAli Toghani, Hiroaki Adachi, Andrés Posbeyikian, Raoul Frijters, Hsuan Pai, Adeline Harant, Juan Carlos Lopez-Agudelo and 6 more

Abstract read
In one paragraph

Article in The Plant cell, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Daniel LüdkeThe Sainsbury Laboratory, University of East Anglia, Norwich Research Park, Norwich NR4 7UH, UK.ORCID 0000-0002-0064-0695
Toshiyuki SakaiLaboratory of Crop Evolution, Graduate School of Agriculture, Kyoto University, Mozume, Muko, Kyoto 617-0001, Japan.ORCID 0000-0003-2737-3299
Jiorgos KourelisThe Sainsbury Laboratory, University of East Anglia, Norwich Research Park, Norwich NR4 7UH, UK.ORCID 0000-0002-9007-1333
AmirAli ToghaniThe Sainsbury Laboratory, University of East Anglia, Norwich Research Park, Norwich NR4 7UH, UK.ORCID 0000-0002-0644-699X
Hiroaki AdachiLaboratory of Crop Evolution, Graduate School of Agriculture, Kyoto University, Mozume, Muko, Kyoto 617-0001, Japan.ORCID 0000-0002-7184-744X
Andrés PosbeyikianThe Sainsbury Laboratory, University of East Anglia, Norwich Research Park, Norwich NR4 7UH, UK.ORCID 0000-0002-9368-6659
Raoul FrijtersDepartment of Biotechnology, Rijk Zwaan Breeding B.V., Fijnaart 4793, the Netherlands.ORCID 0009-0006-6520-9552
Hsuan PaiThe Sainsbury Laboratory, University of East Anglia, Norwich Research Park, Norwich NR4 7UH, UK.ORCID 0000-0002-7284-6131
Adeline HarantThe Sainsbury Laboratory, University of East Anglia, Norwich Research Park, Norwich NR4 7UH, UK.ORCID 0000-0001-7636-4917
Juan Carlos Lopez-AgudeloInstitute of Plant and Microbial Biology, Academia Sinica, Nankang, Taipei 11529, Taiwan.ORCID 0009-0000-2152-3853
Bozeng TangThe Sainsbury Laboratory, University of East Anglia, Norwich Research Park, Norwich NR4 7UH, UK.ORCID 0000-0002-3986-9622
Karin ErnstInstitute of Plant Molecular and Developmental Biology, Heinrich-Heine-University Düsseldorf, Düsseldorf 40225, Germany.ORCID 0009-0002-7254-1749
Martin GanalSGS Institut Fresenius GmbH, TraitGenetics Section, Gatersleben 06466, Germany.ORCID 0000-0002-6649-8441
Adriaan VerhageDepartment of Phytopathology, Rijk Zwaan Breeding B.V., De Lier 2678, The Netherlands.ORCID 0009-0003-0416-9030
Chih-Hang WuInstitute of Plant and Microbial Biology, Academia Sinica, Nankang, Taipei 11529, Taiwan.ORCID 0000-0003-1616-1872
Sophien KamounThe Sainsbury Laboratory, University of East Anglia, Norwich Research Park, Norwich NR4 7UH, UK.ORCID 0000-0002-0290-0315

Funding

2030 Cross-Generation Young Scholars Program of the National Science and Technology Council NSTC 112-2628-B-001-007Academia Sinica Grand Challenge Program AS-GC-111-L02Biotechnology and Biological Sciences Research Council BBS/E/J/000PR9795Biotechnology and Biological Sciences Research Council BBS/E/J/000PR9796Biotechnology and Biological Sciences Research Council BB/V002937/1Biotechnology and Biological Sciences Research Council BB/WW002221/1DFG Ga470/1/1-3DFG Walter Benjamin Programme 464864389European Research Council BASF Plant ScienceGatsby Charitable FoundationJapan Science and Technology AgencyPrecursory Research for Embryonic Science and Technology JPMJPR21D1
6 · The paper itself

Abstract

Plant nucleotide-binding domain and leucine-rich repeat immune receptors (NLRs) confer disease resistance to many foliar and root parasites. However, the extent to which NLR-mediated immunity is differentially regulated between plant organs is poorly known. Here, we show that a large cluster of tomato (Solanum lycopersicum) genes, encoding the cyst and root-knot nematode disease resistance proteins Hero and MeR1 as well as the NLR helper NLR required for cell death 6 (NRC6), is nearly exclusively expressed in the roots. This root-specific gene cluster emerged in Solanum species about 21 million years ago through gene duplication of the ancient asterid NRC network. NLR sensors in this gene cluster function exclusively through NRC6 helpers to trigger hypersensitive cell death. These findings indicate that the NRC6 gene cluster has sub-functionalized from the larger NRC network to specialize in mediating resistance against root pathogens, including cyst and root-knot nematodes. We propose that some NLR gene clusters and networks may have evolved organ-specific gene expression as an adaptation to particular parasites and to reduce the risk of autoimmunity.

Indexed as

Disease ResistanceNematodaNLR ProteinsPlant DiseasesPlant ProteinsPlant RootsSolanum lycopersicumAnimalsGene Expression Regulation, PlantMultigene FamilyPlant ImmunitySignal TransductionNLR ProteinsPlant Proteins

Identifiers

PMID40581623
PMCPMC12236159

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.